Analysis of interatomic Contacts of Structural Units in PDB entry:
9N01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N01 entry

There are 3 chains in PDB entry 9N01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 470PRO 1523
B
 PRO 11GLY 394
C
 ASP 48PHE 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 93 helices in PDB entry 9N01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
470 483Right-handed alpha
Helix 2
AA2
A
489 508Right-handed alpha
Helix 3
AA3
A
515 517Right-handed 310
Helix 4
AA4
A
545 560Right-handed alpha
Helix 5
AA5
A
563 570Right-handed alpha
Helix 6
AA6
A
574 576Right-handed 310
Helix 7
AA7
A
577 589Right-handed alpha
Helix 8
AA8
A
592 605Right-handed alpha
Helix 9
AA9
A
609 621Right-handed alpha
Helix 10
AB1
A
626 628Right-handed 310
Helix 11
AB2
A
629 640Right-handed alpha
Helix 12
AB3
A
640 651Right-handed alpha
Helix 13
AB4
A
653 672Right-handed alpha
Helix 14
AB5
A
673 685Right-handed alpha
Helix 15
AB6
A
686 688Right-handed 310
Helix 16
AB7
A
691 705Right-handed alpha
Helix 17
AB8
A
710 712Right-handed 310
Helix 18
AB9
A
713 722Right-handed alpha
Helix 19
AC1
A
723 724Right-handed 310
Helix 20
AC2
A
725 731Right-handed 310
Helix 21
AC3
A
732 741Right-handed alpha
Helix 22
AC4
A
749 760Right-handed alpha
Helix 23
AC5
A
764 774Right-handed alpha
Helix 24
AC6
A
777 783Right-handed alpha
Helix 25
AC7
A
803 812Right-handed alpha
Helix 26
AC8
A
812 832Right-handed alpha
Helix 27
AC9
A
845 849Right-handed 310
Helix 28
AD1
A
864 884Right-handed alpha
Helix 29
AD2
A
885 897Right-handed alpha
Helix 30
AD3
A
900 914Right-handed alpha
Helix 31
AD4
A
918 926Right-handed alpha
Helix 32
AD5
A
928 934Right-handed alpha
Helix 33
AD6
A
936 948Right-handed alpha
Helix 34
AD7
A
952 965Right-handed alpha
Helix 35
AD8
A
975 987Right-handed alpha
Helix 36
AD9
A
988 989Right-handed 310
Helix 37
AE1
A
990 994Right-handed 310
Helix 38
AE2
A
995 1010Right-handed alpha
Helix 39
AE3
A
1030 1037Right-handed alpha
Helix 40
AE4
A
1038 1050Right-handed alpha
Helix 41
AE5
A
1056 1060Right-handed 310
Helix 42
AE6
A
1064 1079Right-handed alpha
Helix 43
AE7
A
1079 1090Right-handed alpha
Helix 44
AE8
A
1091 1094Right-handed 310
Helix 45
AE9
A
1095 1096Right-handed 310
Helix 46
AF1
A
1097 1114Right-handed alpha
Helix 47
AF2
A
1130 1145Right-handed alpha
Helix 48
AF3
A
1145 1150Right-handed alpha
Helix 49
AF4
A
1152 1164Right-handed alpha
Helix 50
AF5
A
1168 1182Right-handed alpha
Helix 51
AF6
A
1198 1205Right-handed alpha
Helix 52
AF7
A
1205 1225Right-handed alpha
Helix 53
AF8
A
1231 1240Right-handed alpha
Helix 54
AF9
A
1244 1253Right-handed alpha
Helix 55
AG1
A
1254 1262Right-handed alpha
Helix 56
AG2
A
1262 1274Right-handed alpha
Helix 57
AG3
A
1284 1290Right-handed alpha
Helix 58
AG4
A
1295 1310Right-handed alpha
Helix 59
AG5
A
1311 1313Right-handed 310
Helix 60
AG6
A
1314 1328Right-handed alpha
Helix 61
AG7
A
1332 1344Right-handed alpha
Helix 62
AG8
A
1345 1358Right-handed alpha
Helix 63
AG9
A
1358 1365Right-handed alpha
Helix 64
AH1
A
1365 1379Right-handed alpha
Helix 65
AH2
A
1380 1391Right-handed alpha
Helix 66
AH3
A
1392 1397Right-handed alpha
Helix 67
AH4
A
1405 1420Right-handed alpha
Helix 68
AH5
A
1431 1443Right-handed alpha
Helix 69
AH6
A
1443 1462Right-handed alpha
Helix 70
AH7
A
1470 1491Right-handed alpha
Helix 71
AH8
A
1492 1508Right-handed alpha
Helix 72
AH9
A
1511 1520Right-handed alpha
Helix 73
AI1
B
20 24Right-handed 310
Helix 74
AI2
B
25 38Right-handed alpha
Helix 75
AI3
B
46 52Right-handed alpha
Helix 76
AI4
B
84 95Right-handed alpha
Helix 77
AI5
B
114 127Right-handed alpha
Helix 78
AI6
B
145 150Right-handed alpha
Helix 79
AI7
B
153 158Right-handed alpha
Helix 80
AI8
B
164 168Right-handed 310
Helix 81
AI9
B
174 180Right-handed alpha
Helix 82
AJ1
B
182 187Right-handed alpha
Helix 83
AJ2
B
191 199Right-handed alpha
Helix 84
AJ3
B
283 287Right-handed 310
Helix 85
AJ4
C
50 54Right-handed 310
Helix 86
AJ5
C
76 83Right-handed alpha
Helix 87
AJ6
C
113 124Right-handed alpha
Helix 88
AJ7
C
129 149Right-handed alpha
Helix 89
AJ8
C
159 162Right-handed 310
Helix 90
AJ9
C
177 195Right-handed alpha
Helix 91
AK1
C
209 216Right-handed alpha
Helix 92
AK2
C
224 233Right-handed alpha
Helix 93
AK3
C
300 302Right-handed 310
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There are 15 sheets in PDB entry 9N01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 513first strand
Strand 2
A
540 541anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1023 1024first strand
Strand 2
C
104 108anti-parallel
Strand 3
C
289 293anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 71first strand
Strand 2
B
76 80anti-parallel
Strand 3
B
12 18parallel
Strand 4
B
102 104parallel
Strand 5
B
131 133parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
63 64anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
292 294anti-parallel
Strand 3
B
242 246anti-parallel
Strand 4
B
254 260anti-parallel
Strand 5
B
274 279anti-parallel
Strand 6
B
225 231anti-parallel
Strand 7
B
217 221anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
292 294anti-parallel
Strand 3
B
242 246anti-parallel
Strand 4
B
254 260anti-parallel
Strand 5
B
265 266anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 238first strand
Strand 2
B
268 269anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
B
385 394anti-parallel
Strand 3
B
374 375anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
B
385 394anti-parallel
Strand 3
B
300 307anti-parallel
Strand 4
B
359 369anti-parallel
Strand 5
B
336 343anti-parallel
Strand 6
B
330 333anti-parallel
Strand 7
B
377 379anti-parallel
Strand 8
B
382 383anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 72first strand
Strand 2
C
97 102anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 151first strand
Strand 2
C
156 157anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 168first strand
Strand 2
C
304 310parallel
Strand 3
C
253 258anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
203 207first strand
Strand 2
C
237 241parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
265 266first strand
Strand 2
C
297 298anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
279 280first strand
Strand 2
C
285 286anti-parallel
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