Analysis of interatomic Contacts of Structural Units in PDB entry:
9N09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N09 entry

There are 5 chains in PDB entry 9N09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	PHE 354
B	SER 2	ASN 340
G	THR 6	ARG 62
N	GLN 1	SER 128
R	VAL 30	LEU 468

There are 32 helices in PDB entry 9N09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	32	Right-handed alpha
Helix 2	AA2	A	42	49	Right-handed 310
Helix 3	AA3	A	193	199	Right-handed 310
Helix 4	AA4	A	225	239	Right-handed alpha
Helix 5	AA5	A	253	264	Right-handed alpha
Helix 6	AA6	A	267	271	Right-handed 310
Helix 7	AA7	A	272	276	Right-handed 310
Helix 8	AA8	A	291	312	Right-handed alpha
Helix 9	AA9	A	330	351	Right-handed alpha
Helix 10	AB1	B	3	26	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	B	35	37	Right-handed 310
Helix 13	AB4	G	7	24	Right-handed alpha
Helix 14	AB5	G	29	45	Right-handed alpha
Helix 15	AB6	G	46	48	Right-handed 310
Helix 16	AB7	N	28	32	Right-handed 310
Helix 17	AB8	N	62	65	Right-handed 310
Helix 18	AB9	N	87	91	Right-handed 310
Helix 19	AC1	R	31	60	Right-handed alpha
Helix 20	AC2	R	61	64	Right-handed 310
Helix 21	AC3	R	65	84	Right-handed alpha
Helix 22	AC4	R	84	96	Right-handed alpha
Helix 23	AC5	R	101	136	Right-handed alpha
Helix 24	AC6	R	139	144	Right-handed alpha
Helix 25	AC7	R	145	170	Right-handed alpha
Helix 26	AC8	R	170	175	Right-handed alpha
Helix 27	AC9	R	188	191	Right-handed 310
Helix 28	AD1	R	192	204	Right-handed alpha
Helix 29	AD2	R	204	222	Right-handed alpha
Helix 30	AD3	R	394	426	Right-handed alpha
Helix 31	AD4	R	431	453	Right-handed alpha
Helix 32	AD5	R	457	467	Right-handed alpha

There are 10 sheets in PDB entry 9N09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	174	first strand
Strand 2	A	177	183	anti-parallel
Strand 3	A	33	40	parallel
Strand 4	A	203	209	parallel
Strand 5	A	246	252	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N09

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N09