Analysis of interatomic Contacts of Structural Units in PDB entry:
9N0D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N0D entry

There are 15 chains in PDB entry 9N0D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	THR 58
B	ALA 61	ARG 247
C	ALA 252	HIS 485
D	GLN 1	LYS 106
E	VAL 2	ALA 121
F	GLY 2	THR 58
G	ALA 61	ARG 247
H	ALA 252	HIS 485
I	GLN 1	LYS 106
J	VAL 2	ALA 121
K	GLY 2	THR 58
L	ALA 61	ARG 247
M	ALA 252	HIS 485
N	GLN 1	LYS 106
O	VAL 2	ALA 121

There are 57 helices in PDB entry 9N0D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	15	Right-handed alpha
Helix 2	AA2	A	17	42	Right-handed alpha
Helix 3	AA3	A	42	53	Right-handed alpha
Helix 4	AA4	B	77	84	Right-handed alpha
Helix 5	AA5	B	130	135	Right-handed 310
Helix 6	AA6	B	138	153	Right-handed alpha
Helix 7	AA7	B	185	200	Right-handed alpha
Helix 8	AA8	B	230	240	Right-handed alpha
Helix 9	AA9	C	273	277	Right-handed 310
Helix 10	AB1	C	286	291	Right-handed alpha
Helix 11	AB2	C	292	295	Right-handed 310
Helix 12	AB3	C	299	321	Right-handed alpha
Helix 13	AB4	C	329	337	Right-handed alpha
Helix 14	AB5	C	338	351	Right-handed alpha
Helix 15	AB6	C	387	390	Right-handed 310
Helix 16	AB7	C	391	416	Right-handed alpha
Helix 17	AB8	C	419	443	Right-handed alpha
Helix 18	AB9	E	61	65	Right-handed 310
Helix 19	AC1	E	87	91	Right-handed 310
Helix 20	AC2	F	3	15	Right-handed alpha
Helix 21	AC3	F	17	42	Right-handed alpha
Helix 22	AC4	F	42	53	Right-handed alpha
Helix 23	AC5	G	77	84	Right-handed alpha
Helix 24	AC6	G	130	135	Right-handed 310
Helix 25	AC7	G	138	153	Right-handed alpha
Helix 26	AC8	G	185	200	Right-handed alpha
Helix 27	AC9	G	230	240	Right-handed alpha
Helix 28	AD1	H	273	277	Right-handed 310
Helix 29	AD2	H	286	291	Right-handed alpha
Helix 30	AD3	H	292	295	Right-handed 310
Helix 31	AD4	H	299	321	Right-handed alpha
Helix 32	AD5	H	329	337	Right-handed alpha
Helix 33	AD6	H	338	351	Right-handed alpha
Helix 34	AD7	H	387	390	Right-handed 310
Helix 35	AD8	H	391	416	Right-handed alpha
Helix 36	AD9	H	419	443	Right-handed alpha
Helix 37	AE1	J	61	65	Right-handed 310
Helix 38	AE2	J	87	91	Right-handed 310
Helix 39	AE3	K	3	15	Right-handed alpha
Helix 40	AE4	K	17	42	Right-handed alpha
Helix 41	AE5	K	42	53	Right-handed alpha
Helix 42	AE6	L	77	84	Right-handed alpha
Helix 43	AE7	L	130	135	Right-handed 310
Helix 44	AE8	L	138	153	Right-handed alpha
Helix 45	AE9	L	185	200	Right-handed alpha
Helix 46	AF1	L	230	240	Right-handed alpha
Helix 47	AF2	M	273	277	Right-handed 310
Helix 48	AF3	M	286	291	Right-handed alpha
Helix 49	AF4	M	292	295	Right-handed 310
Helix 50	AF5	M	299	321	Right-handed alpha
Helix 51	AF6	M	329	337	Right-handed alpha
Helix 52	AF7	M	338	351	Right-handed alpha
Helix 53	AF8	M	387	390	Right-handed 310
Helix 54	AF9	M	391	416	Right-handed alpha
Helix 55	AG1	M	419	443	Right-handed alpha
Helix 56	AG2	O	61	65	Right-handed 310
Helix 57	AG3	O	87	91	Right-handed 310

There are 33 sheets in PDB entry 9N0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	68	74	anti-parallel
Strand 3	C	360	366	anti-parallel
Strand 4	C	376	377	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	94	first strand
Strand 2	B	98	102	anti-parallel
Strand 3	B	107	113	anti-parallel
Strand 4	B	214	219	anti-parallel
Strand 5	B	175	178	anti-parallel
Strand 6	B	162	164	anti-parallel
Strand 7	B	124	126	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	272	first strand
Strand 2	C	283	284	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	381	first strand
Strand 2	C	384	385	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	450	first strand
Strand 2	C	479	482	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	69	74	anti-parallel
Strand 4	D	61	66	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	101	105	parallel
Strand 3	D	84	89	anti-parallel
Strand 4	D	33	37	anti-parallel
Strand 5	D	44	48	anti-parallel
Strand 6	D	52	53	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	101	105	parallel
Strand 3	D	84	89	anti-parallel
Strand 4	D	96	97	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	116	120	parallel
Strand 3	E	92	101	anti-parallel
Strand 4	E	34	40	anti-parallel
Strand 5	E	44	51	anti-parallel
Strand 6	E	58	59	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	116	120	parallel
Strand 3	E	92	101	anti-parallel
Strand 4	E	107	112	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	22	first strand
Strand 2	E	78	84	anti-parallel
Strand 3	E	68	73	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	64	first strand
Strand 2	G	68	74	anti-parallel
Strand 3	H	360	366	anti-parallel
Strand 4	H	376	377	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	94	first strand
Strand 2	G	98	102	anti-parallel
Strand 3	G	107	113	anti-parallel
Strand 4	G	214	219	anti-parallel
Strand 5	G	175	178	anti-parallel
Strand 6	G	162	164	anti-parallel
Strand 7	G	124	126	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	271	272	first strand
Strand 2	H	283	284	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	380	381	first strand
Strand 2	H	384	385	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	447	450	first strand
Strand 2	H	479	482	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	69	74	anti-parallel
Strand 4	I	61	66	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	101	105	parallel
Strand 3	I	84	89	anti-parallel
Strand 4	I	33	37	anti-parallel
Strand 5	I	44	48	anti-parallel
Strand 6	I	52	53	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	101	105	parallel
Strand 3	I	84	89	anti-parallel
Strand 4	I	96	97	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	116	120	parallel
Strand 3	J	92	101	anti-parallel
Strand 4	J	34	40	anti-parallel
Strand 5	J	44	51	anti-parallel
Strand 6	J	58	59	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	116	120	parallel
Strand 3	J	92	101	anti-parallel
Strand 4	J	107	112	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	17	22	first strand
Strand 2	J	78	84	anti-parallel
Strand 3	J	68	73	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	62	64	first strand
Strand 2	L	68	74	anti-parallel
Strand 3	M	360	366	anti-parallel
Strand 4	M	376	377	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	90	94	first strand
Strand 2	L	98	102	anti-parallel
Strand 3	L	107	113	anti-parallel
Strand 4	L	214	219	anti-parallel
Strand 5	L	175	178	anti-parallel
Strand 6	L	162	164	anti-parallel
Strand 7	L	124	126	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	271	272	first strand
Strand 2	M	283	284	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	380	381	first strand
Strand 2	M	384	385	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	447	450	first strand
Strand 2	M	479	482	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	69	74	anti-parallel
Strand 4	N	61	66	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	101	105	parallel
Strand 3	N	84	89	anti-parallel
Strand 4	N	33	37	anti-parallel
Strand 5	N	44	48	anti-parallel
Strand 6	N	52	53	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	101	105	parallel
Strand 3	N	84	89	anti-parallel
Strand 4	N	96	97	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	12	first strand
Strand 2	O	116	120	parallel
Strand 3	O	92	101	anti-parallel
Strand 4	O	34	40	anti-parallel
Strand 5	O	44	51	anti-parallel
Strand 6	O	58	59	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	12	first strand
Strand 2	O	116	120	parallel
Strand 3	O	92	101	anti-parallel
Strand 4	O	107	112	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	17	22	first strand
Strand 2	O	78	84	anti-parallel
Strand 3	O	68	73	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N0D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N0D