Analysis of interatomic Contacts of Structural Units in PDB entry:
9N0E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N0E entry

There are 6 chains in PDB entry 9N0E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 2	ASN 340
P	HIS 1	MET 27
G	ALA 7	ARG 62
N	GLN 1	SER 128
R	ALA 25	GLY 421
A	THR 9	LEU 394

There are 35 helices in PDB entry 9N0E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	3	26	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	P	2	27	Right-handed alpha
Helix 4	AA4	G	8	25	Right-handed alpha
Helix 5	AA5	G	29	44	Right-handed alpha
Helix 6	AA6	G	45	48	Right-handed 310
Helix 7	AA7	G	55	59	Right-handed 310
Helix 8	AA8	N	28	32	Right-handed 310
Helix 9	AA9	N	87	91	Right-handed 310
Helix 10	AB1	R	27	46	Right-handed alpha
Helix 11	AB2	R	47	50	Right-handed 310
Helix 12	AB3	R	87	92	Right-handed alpha
Helix 13	AB4	R	124	166	Right-handed alpha
Helix 14	AB5	R	171	203	Right-handed alpha
Helix 15	AB6	R	208	216	Right-handed alpha
Helix 16	AB7	R	217	220	Right-handed 310
Helix 17	AB8	R	221	254	Right-handed alpha
Helix 18	AB9	R	263	273	Right-handed alpha
Helix 19	AC1	R	273	290	Right-handed alpha
Helix 20	AC2	R	300	335	Right-handed alpha
Helix 21	AC3	R	344	359	Right-handed alpha
Helix 22	AC4	R	362	367	Right-handed alpha
Helix 23	AC5	R	374	401	Right-handed alpha
Helix 24	AC6	R	404	421	Right-handed alpha
Helix 25	AC7	A	10	39	Right-handed alpha
Helix 26	AC8	A	49	52	Right-handed 310
Helix 27	AC9	A	53	58	Right-handed alpha
Helix 28	AD1	A	233	239	Right-handed 310
Helix 29	AD2	A	264	279	Right-handed alpha
Helix 30	AD3	A	280	283	Right-handed 310
Helix 31	AD4	A	293	303	Right-handed alpha
Helix 32	AD5	A	307	312	Right-handed alpha
Helix 33	AD6	A	313	317	Right-handed 310
Helix 34	AD7	A	331	352	Right-handed alpha
Helix 35	AD8	A	370	391	Right-handed alpha

There are 11 sheets in PDB entry 9N0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	69	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	76	80	first strand
Strand 2	R	95	99	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	363	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N0E

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N0E