Analysis of interatomic Contacts of Structural Units in PDB entry:
9N0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N0Q entry

There are 5 chains in PDB entry 9N0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 18ASP 1711
B
 THR 118ARG 183
C
 THR 118THR 166
D
 THR 118THR 166
E
 THR 118THR 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 89 helices in PDB entry 9N0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 41Right-handed alpha
Helix 2
AA2
A
45 53Right-handed alpha
Helix 3
AA3
A
61 63Right-handed 310
Helix 4
AA4
A
64 70Right-handed alpha
Helix 5
AA5
A
81 99Right-handed alpha
Helix 6
AA6
A
104 118Right-handed alpha
Helix 7
AA7
A
118 139Right-handed alpha
Helix 8
AA8
A
176 202Right-handed alpha
Helix 9
AA9
A
208 221Right-handed alpha
Helix 10
AB1
A
225 249Right-handed alpha
Helix 11
AB2
A
255 259Right-handed 310
Helix 12
AB3
A
261 266Right-handed alpha
Helix 13
AB4
A
266 280Right-handed alpha
Helix 14
AB5
A
280 289Right-handed alpha
Helix 15
AB6
A
300 312Right-handed alpha
Helix 16
AB7
A
318 346Right-handed alpha
Helix 17
AB8
A
358 368Right-handed alpha
Helix 18
AB9
A
378 382Right-handed 310
Helix 19
AC1
A
397 402Right-handed alpha
Helix 20
AC2
A
410 417Right-handed 310
Helix 21
AC3
A
419 428Right-handed alpha
Helix 22
AC4
A
442 449Right-handed alpha
Helix 23
AC5
A
454 465Right-handed alpha
Helix 24
AC6
A
468 471Right-handed 310
Helix 25
AC7
A
495 512Right-handed alpha
Helix 26
AC8
A
516 524Right-handed alpha
Helix 27
AC9
A
524 539Right-handed alpha
Helix 28
AD1
A
553 558Right-handed alpha
Helix 29
AD2
A
559 574Right-handed alpha
Helix 30
AD3
A
581 586Right-handed alpha
Helix 31
AD4
A
587 589Right-handed 310
Helix 32
AD5
A
627 645Right-handed alpha
Helix 33
AD6
A
670 689Right-handed alpha
Helix 34
AD7
A
694 698Right-handed 310
Helix 35
AD8
A
720 726Right-handed alpha
Helix 36
AD9
A
738 756Right-handed alpha
Helix 37
AE1
A
759 779Right-handed alpha
Helix 38
AE2
A
780 785Right-handed alpha
Helix 39
AE3
A
786 795Right-handed alpha
Helix 40
AE4
A
797 801Right-handed 310
Helix 41
AE5
A
805 809Right-handed 310
Helix 42
AE6
A
819 834Right-handed alpha
Helix 43
AE7
A
838 847Right-handed alpha
Helix 44
AE8
A
855 862Right-handed alpha
Helix 45
AE9
A
880 890Right-handed alpha
Helix 46
AF1
A
902 915Right-handed alpha
Helix 47
AF2
A
921 930Right-handed alpha
Helix 48
AF3
A
932 946Right-handed alpha
Helix 49
AF4
A
950 957Right-handed alpha
Helix 50
AF5
A
960 979Right-handed alpha
Helix 51
AF6
A
986 991Right-handed 310
Helix 52
AF7
A
993 1007Right-handed alpha
Helix 53
AF8
A
1017 1021Right-handed alpha
Helix 54
AF9
A
1032 1036Right-handed 310
Helix 55
AG1
A
1084 1100Right-handed alpha
Helix 56
AG2
A
1104 1118Right-handed alpha
Helix 57
AG3
A
1153 1156Right-handed 310
Helix 58
AG4
A
1178 1196Right-handed alpha
Helix 59
AG5
A
1210 1214Right-handed 310
Helix 60
AG6
A
1255 1277Right-handed alpha
Helix 61
AG7
A
1279 1284Right-handed alpha
Helix 62
AG8
A
1297 1303Right-handed alpha
Helix 63
AG9
A
1305 1320Right-handed alpha
Helix 64
AH1
A
1322 1335Right-handed alpha
Helix 65
AH2
A
1338 1348Right-handed alpha
Helix 66
AH3
A
1351 1357Right-handed alpha
Helix 67
AH4
A
1357 1364Right-handed alpha
Helix 68
AH5
A
1371 1381Right-handed alpha
Helix 69
AH6
A
1381 1386Right-handed alpha
Helix 70
AH7
A
1398 1403Right-handed alpha
Helix 71
AH8
A
1408 1420Right-handed alpha
Helix 72
AH9
A
1450 1464Right-handed alpha
Helix 73
AI1
A
1476 1486Right-handed alpha
Helix 74
AI2
A
1499 1509Right-handed alpha
Helix 75
AI3
A
1519 1525Right-handed alpha
Helix 76
AI4
A
1590 1594Right-handed 310
Helix 77
AI5
A
1597 1616Right-handed alpha
Helix 78
AI6
A
1623 1641Right-handed alpha
Helix 79
AI7
A
1683 1689Right-handed alpha
Helix 80
AI8
A
1701 1709Right-handed alpha
Helix 81
AI9
B
119 126Right-handed alpha
Helix 82
AJ1
B
127 168Right-handed alpha
Helix 83
AJ2
C
119 125Right-handed alpha
Helix 84
AJ3
C
127 165Right-handed alpha
Helix 85
AJ4
D
119 125Right-handed alpha
Helix 86
AJ5
D
127 160Right-handed alpha
Helix 87
AJ6
D
161 166Right-handed alpha
Helix 88
AJ7
E
119 126Right-handed alpha
Helix 89
AJ8
E
127 166Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9N0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
170 175parallel
Strand 3
A
162 166anti-parallel
Strand 4
A
154 159anti-parallel
Strand 5
A
145 151anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 353first strand
Strand 2
A
384 386anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
489 494parallel
Strand 3
A
473 478anti-parallel
Strand 4
A
591 594parallel
Strand 5
A
615 617anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
650 655first strand
Strand 2
A
658 663anti-parallel
Strand 3
A
545 550anti-parallel
Strand 4
A
699 701anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
704 707first strand
Strand 2
A
710 713anti-parallel
Strand 3
A
716 717anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1022 1026first strand
Strand 2
A
1204 1208anti-parallel
Strand 3
A
1038 1043anti-parallel
Strand 4
A
1158 1160anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1490 1493first strand
Strand 2
A
1468 1471parallel
Strand 3
A
1533 1534parallel
Strand 4
A
1542 1547parallel
Strand 5
A
1563 1567anti-parallel
Strand 6
A
1570 1571anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1659 1662first strand
Strand 2
A
1651 1654anti-parallel
Strand 3
A
1671 1672anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il