Analysis of interatomic Contacts of Structural Units in PDB entry:
9N0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N0T entry

There are 5 chains in PDB entry 9N0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 18ASP 1711
B
 SER 130PRO 182
C
 HIS 127THR 166
D
 HIS 127THR 166
E
 SER 130THR 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 9N0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 41Right-handed alpha
Helix 2
AA2
A
45 53Right-handed alpha
Helix 3
AA3
A
81 99Right-handed alpha
Helix 4
AA4
A
102 116Right-handed alpha
Helix 5
AA5
A
118 139Right-handed alpha
Helix 6
AA6
A
176 202Right-handed alpha
Helix 7
AA7
A
208 222Right-handed alpha
Helix 8
AA8
A
225 235Right-handed alpha
Helix 9
AA9
A
235 248Right-handed alpha
Helix 10
AB1
A
261 266Right-handed alpha
Helix 11
AB2
A
266 280Right-handed alpha
Helix 12
AB3
A
280 290Right-handed alpha
Helix 13
AB4
A
300 313Right-handed alpha
Helix 14
AB5
A
318 346Right-handed alpha
Helix 15
AB6
A
358 368Right-handed alpha
Helix 16
AB7
A
371 375Right-handed 310
Helix 17
AB8
A
379 384Right-handed 310
Helix 18
AB9
A
413 417Right-handed 310
Helix 19
AC1
A
419 427Right-handed alpha
Helix 20
AC2
A
442 448Right-handed alpha
Helix 21
AC3
A
454 465Right-handed alpha
Helix 22
AC4
A
494 511Right-handed alpha
Helix 23
AC5
A
511 516Right-handed alpha
Helix 24
AC6
A
518 524Right-handed alpha
Helix 25
AC7
A
524 542Right-handed alpha
Helix 26
AC8
A
566 574Right-handed alpha
Helix 27
AC9
A
581 590Right-handed alpha
Helix 28
AD1
A
627 645Right-handed alpha
Helix 29
AD2
A
670 688Right-handed alpha
Helix 30
AD3
A
719 723Right-handed 310
Helix 31
AD4
A
738 756Right-handed alpha
Helix 32
AD5
A
759 778Right-handed alpha
Helix 33
AD6
A
780 785Right-handed alpha
Helix 34
AD7
A
786 795Right-handed alpha
Helix 35
AD8
A
809 813Right-handed 310
Helix 36
AD9
A
820 834Right-handed alpha
Helix 37
AE1
A
838 847Right-handed alpha
Helix 38
AE2
A
855 862Right-handed alpha
Helix 39
AE3
A
880 889Right-handed alpha
Helix 40
AE4
A
895 900Right-handed alpha
Helix 41
AE5
A
902 915Right-handed alpha
Helix 42
AE6
A
921 932Right-handed alpha
Helix 43
AE7
A
932 946Right-handed alpha
Helix 44
AE8
A
959 979Right-handed alpha
Helix 45
AE9
A
986 991Right-handed alpha
Helix 46
AF1
A
993 1007Right-handed alpha
Helix 47
AF2
A
1017 1021Right-handed alpha
Helix 48
AF3
A
1048 1054Right-handed alpha
Helix 49
AF4
A
1084 1100Right-handed alpha
Helix 50
AF5
A
1104 1118Right-handed alpha
Helix 51
AF6
A
1151 1156Right-handed alpha
Helix 52
AF7
A
1178 1196Right-handed alpha
Helix 53
AF8
A
1210 1214Right-handed 310
Helix 54
AF9
A
1255 1276Right-handed alpha
Helix 55
AG1
A
1296 1303Right-handed alpha
Helix 56
AG2
A
1305 1320Right-handed alpha
Helix 57
AG3
A
1322 1335Right-handed alpha
Helix 58
AG4
A
1338 1348Right-handed alpha
Helix 59
AG5
A
1352 1357Right-handed alpha
Helix 60
AG6
A
1357 1367Right-handed alpha
Helix 61
AG7
A
1371 1386Right-handed alpha
Helix 62
AG8
A
1386 1393Right-handed alpha
Helix 63
AG9
A
1405 1407Right-handed 310
Helix 64
AH1
A
1408 1419Right-handed alpha
Helix 65
AH2
A
1450 1465Right-handed alpha
Helix 66
AH3
A
1476 1483Right-handed alpha
Helix 67
AH4
A
1484 1486Right-handed 310
Helix 68
AH5
A
1498 1508Right-handed alpha
Helix 69
AH6
A
1513 1518Right-handed alpha
Helix 70
AH7
A
1519 1525Right-handed alpha
Helix 71
AH8
A
1590 1594Right-handed 310
Helix 72
AH9
A
1597 1617Right-handed alpha
Helix 73
AI1
A
1623 1641Right-handed alpha
Helix 74
AI2
A
1701 1709Right-handed alpha
Helix 75
AI3
B
131 166Right-handed alpha
Helix 76
AI4
C
128 163Right-handed alpha
Helix 77
AI5
D
129 160Right-handed alpha
Helix 78
AI6
D
161 166Right-handed alpha
Helix 79
AI7
E
131 166Right-handed alpha
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There are 8 sheets in PDB entry 9N0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
170 175parallel
Strand 3
A
162 166anti-parallel
Strand 4
A
154 159anti-parallel
Strand 5
A
149 151anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 490first strand
Strand 2
A
474 478anti-parallel
Strand 3
A
592 594parallel
Strand 4
A
615 616anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 548first strand
Strand 2
A
659 664anti-parallel
Strand 3
A
649 654anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
704 706first strand
Strand 2
A
711 713anti-parallel
Strand 3
A
716 717anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1022 1026first strand
Strand 2
A
1204 1208anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1490 1491first strand
Strand 2
A
1468 1471parallel
Strand 3
A
1533 1534parallel
Strand 4
A
1542 1543parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1566 1567first strand
Strand 2
A
1570 1571anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1660 1662first strand
Strand 2
A
1651 1653anti-parallel
Strand 3
A
1671 1672anti-parallel
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