Analysis of interatomic Contacts of Structural Units in PDB entry:
9N0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N0Y entry

There are 4 chains in PDB entry 9N0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10ALA 589
B
 ASP 9ASN 447
C
 MET 1LEU 309
D
 ASN 65SER 86
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9N0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 21Right-handed alpha
Helix 2
AA2
A
24 33Right-handed alpha
Helix 3
AA3
A
34 43Right-handed alpha
Helix 4
AA4
A
43 51Right-handed alpha
Helix 5
AA5
A
51 57Right-handed alpha
Helix 6
AA6
A
62 75Right-handed alpha
Helix 7
AA7
A
85 88Right-handed 310
Helix 8
AA8
A
89 97Right-handed alpha
Helix 9
AA9
A
101 117Right-handed alpha
Helix 10
AB1
A
120 136Right-handed alpha
Helix 11
AB2
A
140 148Right-handed alpha
Helix 12
AB3
A
150 155Right-handed alpha
Helix 13
AB4
A
159 174Right-handed alpha
Helix 14
AB5
A
178 196Right-handed alpha
Helix 15
AB6
A
197 214Right-handed alpha
Helix 16
AB7
A
220 233Right-handed alpha
Helix 17
AB8
A
244 252Right-handed alpha
Helix 18
AB9
A
256 265Right-handed alpha
Helix 19
AC1
A
266 292Right-handed alpha
Helix 20
AC2
A
295 305Right-handed alpha
Helix 21
AC3
A
305 311Right-handed alpha
Helix 22
AC4
A
317 334Right-handed alpha
Helix 23
AC5
A
338 347Right-handed alpha
Helix 24
AC6
A
348 351Right-handed 310
Helix 25
AC7
A
352 373Right-handed alpha
Helix 26
AC8
A
377 387Right-handed alpha
Helix 27
AC9
A
388 396Right-handed alpha
Helix 28
AD1
A
397 412Right-handed alpha
Helix 29
AD2
A
416 435Right-handed alpha
Helix 30
AD3
A
435 443Right-handed alpha
Helix 31
AD4
A
443 452Right-handed alpha
Helix 32
AD5
A
455 474Right-handed alpha
Helix 33
AD6
A
474 482Right-handed alpha
Helix 34
AD7
A
482 490Right-handed alpha
Helix 35
AD8
A
494 510Right-handed alpha
Helix 36
AD9
A
513 529Right-handed alpha
Helix 37
AE1
A
533 548Right-handed alpha
Helix 38
AE2
A
549 551Right-handed 310
Helix 39
AE3
A
552 559Right-handed alpha
Helix 40
AE4
A
559 568Right-handed alpha
Helix 41
AE5
A
573 586Right-handed alpha
Helix 42
AE6
B
26 30Right-handed 310
Helix 43
AE7
B
281 286Right-handed alpha
Helix 44
AE8
B
326 330Right-handed 310
Helix 45
AE9
B
332 338Right-handed alpha
Helix 46
AF1
B
411 413Right-handed 310
Helix 47
AF2
C
2 18Right-handed alpha
Helix 48
AF3
C
24 40Right-handed alpha
Helix 49
AF4
C
61 72Right-handed alpha
Helix 50
AF5
C
92 107Right-handed alpha
Helix 51
AF6
C
120 127Right-handed alpha
Helix 52
AF7
C
128 138Right-handed alpha
Helix 53
AF8
C
140 151Right-handed alpha
Helix 54
AF9
C
176 183Right-handed alpha
Helix 55
AG1
C
193 201Right-handed alpha
Helix 56
AG2
C
221 232Right-handed alpha
Helix 57
AG3
C
264 268Right-handed 310
Helix 58
AG4
D
77 81Right-handed 310
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There are 14 sheets in PDB entry 9N0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
443 444anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
43 46anti-parallel
Strand 3
B
51 57anti-parallel
Strand 4
B
71 78anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
118 122anti-parallel
Strand 3
B
170 173anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 132first strand
Strand 2
B
156 166anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 185first strand
Strand 2
B
191 194anti-parallel
Strand 3
B
199 204anti-parallel
Strand 4
B
215 216anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
C
299 300parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
268 269anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 293first strand
Strand 2
B
300 302anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 349first strand
Strand 2
B
358 360anti-parallel
Strand 3
B
366 369anti-parallel
Strand 4
B
376 378anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 398first strand
Strand 2
B
408 409parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 53first strand
Strand 2
C
277 278anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 82first strand
Strand 2
C
111 113parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 159first strand
Strand 2
C
163 165anti-parallel
Strand 3
C
236 239parallel
Strand 4
C
256 259parallel
Strand 5
C
248 251anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 211first strand
Strand 2
C
218 219anti-parallel
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