Analysis of interatomic Contacts of Structural Units in PDB entry:
9N10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N10 entry

There are 2 chains in PDB entry 9N10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 162ASN 1264
B
 ASN 105TYR 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9N10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
164 172Right-handed alpha
Helix 2
AA2
A
175 185Right-handed alpha
Helix 3
AA3
A
186 189Right-handed 310
Helix 4
AA4
A
193 222Right-handed alpha
Helix 5
AA5
A
348 379Right-handed alpha
Helix 6
AA6
A
390 407Right-handed alpha
Helix 7
AA7
A
410 429Right-handed alpha
Helix 8
AA8
A
435 444Right-handed alpha
Helix 9
AA9
A
507 516Right-handed alpha
Helix 10
AB1
A
523 527Right-handed 310
Helix 11
AB2
A
538 554Right-handed alpha
Helix 12
AB3
A
577 586Right-handed alpha
Helix 13
AB4
A
596 603Right-handed alpha
Helix 14
AB5
A
607 611Right-handed 310
Helix 15
AB6
A
655 662Right-handed 310
Helix 16
AB7
A
683 699Right-handed alpha
Helix 17
AB8
A
713 723Right-handed alpha
Helix 18
AB9
A
756 767Right-handed alpha
Helix 19
AC1
A
778 790Right-handed alpha
Helix 20
AC2
A
793 799Right-handed 310
Helix 21
AC3
A
800 805Right-handed alpha
Helix 22
AC4
A
810 813Right-handed 310
Helix 23
AC5
A
824 832Right-handed alpha
Helix 24
AC6
A
842 844Right-handed 310
Helix 25
AC7
A
845 857Right-handed alpha
Helix 26
AC8
A
869 876Right-handed alpha
Helix 27
AC9
A
887 894Right-handed alpha
Helix 28
AD1
A
903 944Right-handed alpha
Helix 29
AD2
A
951 963Right-handed alpha
Helix 30
AD3
A
967 973Right-handed 310
Helix 31
AD4
A
994 999Right-handed alpha
Helix 32
AD5
A
1001 1025Right-handed alpha
Helix 33
AD6
A
1028 1035Right-handed alpha
Helix 34
AD7
A
1107 1115Right-handed alpha
Helix 35
AD8
A
1155 1184Right-handed alpha
Helix 36
AD9
A
1192 1196Right-handed 310
Helix 37
AE1
A
1197 1214Right-handed alpha
Helix 38
AE2
A
1216 1224Right-handed alpha
Helix 39
AE3
A
1229 1242Right-handed alpha
Helix 40
AE4
A
1244 1249Right-handed alpha
Helix 41
AE5
A
1251 1260Right-handed alpha
Helix 42
AE6
B
107 117Right-handed alpha
Helix 43
AE7
B
120 131Right-handed alpha
Helix 44
AE8
B
132 134Right-handed 310
Helix 45
AE9
B
138 170Right-handed alpha
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There are 5 sheets in PDB entry 9N10. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 433first strand
Strand 2
A
896 897anti-parallel
Strand 3
A
878 881parallel
Strand 4
A
860 864parallel
Strand 5
A
447 451parallel
Strand 6
A
770 774parallel
Strand 7
A
837 839parallel
Strand 8
A
806 808parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 502first strand
Strand 2
A
483 489anti-parallel
Strand 3
A
462 469anti-parallel
Strand 4
A
742 750anti-parallel
Strand 5
A
702 712anti-parallel
Strand 6
A
647 653anti-parallel
Strand 7
A
620 626anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 562first strand
Strand 2
A
569 572anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 633first strand
Strand 2
A
636 637anti-parallel
Strand 3
A
673 676parallel
Strand 4
A
666 669anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1036 1042first strand
Strand 2
A
1050 1063anti-parallel
Strand 3
A
1070 1079anti-parallel
Strand 4
A
1084 1093anti-parallel
Strand 5
B
178 179parallel
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