Analysis of interatomic Contacts of Structural Units in PDB entry:
9N1J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N1J entry

There are 4 chains in PDB entry 9N1J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 30	LEU 1232
D	SER 30	LEU 1232
B	SER 30	LEU 1232
C	SER 30	LEU 1232

There are192 helices in PDB entry 9N1J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	36	Right-handed alpha
Helix 2	AA2	A	130	141	Right-handed alpha
Helix 3	AA3	A	163	181	Right-handed alpha
Helix 4	AA4	A	193	209	Right-handed alpha
Helix 5	AA5	A	220	224	Right-handed 310
Helix 6	AA6	A	226	231	Right-handed 310
Helix 7	AA7	A	273	287	Right-handed alpha
Helix 8	AA8	A	308	319	Right-handed alpha
Helix 9	AA9	A	334	345	Right-handed alpha
Helix 10	AB1	A	353	368	Right-handed alpha
Helix 11	AB2	A	371	387	Right-handed alpha
Helix 12	AB3	A	388	392	Right-handed 310
Helix 13	AB4	A	405	418	Right-handed alpha
Helix 14	AB5	A	420	432	Right-handed alpha
Helix 15	AB6	A	433	440	Right-handed alpha
Helix 16	AB7	A	451	463	Right-handed alpha
Helix 17	AB8	A	465	474	Right-handed alpha
Helix 18	AB9	A	478	483	Right-handed alpha
Helix 19	AC1	A	484	493	Right-handed alpha
Helix 20	AC2	A	501	514	Right-handed alpha
Helix 21	AC3	A	533	546	Right-handed alpha
Helix 22	AC4	A	555	566	Right-handed alpha
Helix 23	AC5	A	613	625	Right-handed alpha
Helix 24	AC6	A	627	637	Right-handed alpha
Helix 25	AC7	A	640	662	Right-handed alpha
Helix 26	AC8	A	665	694	Right-handed alpha
Helix 27	AC9	A	694	704	Right-handed alpha
Helix 28	AD1	A	713	721	Right-handed alpha
Helix 29	AD2	A	723	728	Right-handed alpha
Helix 30	AD3	A	729	742	Right-handed alpha
Helix 31	AD4	A	751	760	Right-handed alpha
Helix 32	AD5	A	761	764	Right-handed 310
Helix 33	AD6	A	835	846	Right-handed alpha
Helix 34	AD7	A	847	872	Right-handed alpha
Helix 35	AD8	A	879	902	Right-handed alpha
Helix 36	AD9	A	907	917	Right-handed alpha
Helix 37	AE1	A	918	940	Right-handed alpha
Helix 38	AE2	A	943	968	Right-handed alpha
Helix 39	AE3	A	972	1010	Right-handed alpha
Helix 40	AE4	A	1017	1030	Right-handed alpha
Helix 41	AE5	A	1031	1033	Right-handed 310
Helix 42	AE6	A	1036	1040	Right-handed 310
Helix 43	AE7	A	1066	1094	Right-handed alpha
Helix 44	AE8	A	1094	1120	Right-handed alpha
Helix 45	AE9	A	1124	1126	Right-handed 310
Helix 46	AF1	A	1127	1145	Right-handed alpha
Helix 47	AF2	A	1163	1191	Right-handed alpha
Helix 48	AF3	A	1192	1232	Right-handed alpha
Helix 49	AF4	D	31	36	Right-handed alpha
Helix 50	AF5	D	130	141	Right-handed alpha
Helix 51	AF6	D	163	181	Right-handed alpha
Helix 52	AF7	D	193	209	Right-handed alpha
Helix 53	AF8	D	220	224	Right-handed 310
Helix 54	AF9	D	226	231	Right-handed 310
Helix 55	AG1	D	273	287	Right-handed alpha
Helix 56	AG2	D	308	319	Right-handed alpha
Helix 57	AG3	D	334	345	Right-handed alpha
Helix 58	AG4	D	353	368	Right-handed alpha
Helix 59	AG5	D	371	387	Right-handed alpha
Helix 60	AG6	D	388	392	Right-handed 310
Helix 61	AG7	D	405	418	Right-handed alpha
Helix 62	AG8	D	420	432	Right-handed alpha
Helix 63	AG9	D	433	440	Right-handed alpha
Helix 64	AH1	D	451	463	Right-handed alpha
Helix 65	AH2	D	465	474	Right-handed alpha
Helix 66	AH3	D	478	483	Right-handed alpha
Helix 67	AH4	D	484	493	Right-handed alpha
Helix 68	AH5	D	501	514	Right-handed alpha
Helix 69	AH6	D	533	546	Right-handed alpha
Helix 70	AH7	D	555	566	Right-handed alpha
Helix 71	AH8	D	613	625	Right-handed alpha
Helix 72	AH9	D	627	637	Right-handed alpha
Helix 73	AI1	D	640	662	Right-handed alpha
Helix 74	AI2	D	665	694	Right-handed alpha
Helix 75	AI3	D	694	704	Right-handed alpha
Helix 76	AI4	D	713	721	Right-handed alpha
Helix 77	AI5	D	723	728	Right-handed alpha
Helix 78	AI6	D	729	742	Right-handed alpha
Helix 79	AI7	D	751	760	Right-handed alpha
Helix 80	AI8	D	761	764	Right-handed 310
Helix 81	AI9	D	835	846	Right-handed alpha
Helix 82	AJ1	D	847	872	Right-handed alpha
Helix 83	AJ2	D	879	902	Right-handed alpha
Helix 84	AJ3	D	907	917	Right-handed alpha
Helix 85	AJ4	D	918	940	Right-handed alpha
Helix 86	AJ5	D	943	968	Right-handed alpha
Helix 87	AJ6	D	972	1010	Right-handed alpha
Helix 88	AJ7	D	1017	1030	Right-handed alpha
Helix 89	AJ8	D	1031	1033	Right-handed 310
Helix 90	AJ9	D	1036	1040	Right-handed 310
Helix 91	AK1	D	1066	1094	Right-handed alpha
Helix 92	AK2	D	1094	1120	Right-handed alpha
Helix 93	AK3	D	1124	1126	Right-handed 310
Helix 94	AK4	D	1127	1145	Right-handed alpha
Helix 95	AK5	D	1163	1191	Right-handed alpha
Helix 96	AK6	D	1192	1232	Right-handed alpha
Helix 97	AK7	B	31	36	Right-handed alpha
Helix 98	AK8	B	130	141	Right-handed alpha
Helix 99	AK9	B	163	181	Right-handed alpha
Helix 100	AL1	B	193	209	Right-handed alpha
Helix 101	AL2	B	220	224	Right-handed 310
Helix 102	AL3	B	226	231	Right-handed 310
Helix 103	AL4	B	273	287	Right-handed alpha
Helix 104	AL5	B	308	319	Right-handed alpha
Helix 105	AL6	B	334	345	Right-handed alpha
Helix 106	AL7	B	353	368	Right-handed alpha
Helix 107	AL8	B	371	387	Right-handed alpha
Helix 108	AL9	B	388	392	Right-handed 310
Helix 109	AM1	B	405	418	Right-handed alpha
Helix 110	AM2	B	420	432	Right-handed alpha
Helix 111	AM3	B	433	440	Right-handed alpha
Helix 112	AM4	B	451	463	Right-handed alpha
Helix 113	AM5	B	465	474	Right-handed alpha
Helix 114	AM6	B	478	483	Right-handed alpha
Helix 115	AM7	B	484	493	Right-handed alpha
Helix 116	AM8	B	501	514	Right-handed alpha
Helix 117	AM9	B	533	546	Right-handed alpha
Helix 118	AN1	B	555	566	Right-handed alpha
Helix 119	AN2	B	613	625	Right-handed alpha
Helix 120	AN3	B	627	637	Right-handed alpha
Helix 121	AN4	B	640	662	Right-handed alpha
Helix 122	AN5	B	665	694	Right-handed alpha
Helix 123	AN6	B	694	704	Right-handed alpha
Helix 124	AN7	B	713	721	Right-handed alpha
Helix 125	AN8	B	723	728	Right-handed alpha
Helix 126	AN9	B	729	742	Right-handed alpha
Helix 127	AO1	B	751	760	Right-handed alpha
Helix 128	AO2	B	761	764	Right-handed 310
Helix 129	AO3	B	835	846	Right-handed alpha
Helix 130	AO4	B	847	872	Right-handed alpha
Helix 131	AO5	B	879	902	Right-handed alpha
Helix 132	AO6	B	907	917	Right-handed alpha
Helix 133	AO7	B	918	940	Right-handed alpha
Helix 134	AO8	B	943	968	Right-handed alpha
Helix 135	AO9	B	972	1010	Right-handed alpha
Helix 136	AP1	B	1017	1030	Right-handed alpha
Helix 137	AP2	B	1031	1033	Right-handed 310
Helix 138	AP3	B	1036	1040	Right-handed 310
Helix 139	AP4	B	1066	1094	Right-handed alpha
Helix 140	AP5	B	1094	1120	Right-handed alpha
Helix 141	AP6	B	1124	1126	Right-handed 310
Helix 142	AP7	B	1127	1145	Right-handed alpha
Helix 143	AP8	B	1163	1191	Right-handed alpha
Helix 144	AP9	B	1192	1232	Right-handed alpha
Helix 145	AQ1	C	31	36	Right-handed alpha
Helix 146	AQ2	C	130	141	Right-handed alpha
Helix 147	AQ3	C	163	181	Right-handed alpha
Helix 148	AQ4	C	193	209	Right-handed alpha
Helix 149	AQ5	C	220	224	Right-handed 310
Helix 150	AQ6	C	226	231	Right-handed 310
Helix 151	AQ7	C	273	287	Right-handed alpha
Helix 152	AQ8	C	308	319	Right-handed alpha
Helix 153	AQ9	C	334	345	Right-handed alpha
Helix 154	AR1	C	353	368	Right-handed alpha
Helix 155	AR2	C	371	387	Right-handed alpha
Helix 156	AR3	C	388	392	Right-handed 310
Helix 157	AR4	C	405	418	Right-handed alpha
Helix 158	AR5	C	420	432	Right-handed alpha
Helix 159	AR6	C	433	440	Right-handed alpha
Helix 160	AR7	C	451	463	Right-handed alpha
Helix 161	AR8	C	465	474	Right-handed alpha
Helix 162	AR9	C	478	483	Right-handed alpha
Helix 163	AS1	C	484	493	Right-handed alpha
Helix 164	AS2	C	501	514	Right-handed alpha
Helix 165	AS3	C	533	546	Right-handed alpha
Helix 166	AS4	C	555	566	Right-handed alpha
Helix 167	AS5	C	613	625	Right-handed alpha
Helix 168	AS6	C	627	637	Right-handed alpha
Helix 169	AS7	C	640	662	Right-handed alpha
Helix 170	AS8	C	665	694	Right-handed alpha
Helix 171	AS9	C	694	704	Right-handed alpha
Helix 172	AT1	C	713	721	Right-handed alpha
Helix 173	AT2	C	723	728	Right-handed alpha
Helix 174	AT3	C	729	742	Right-handed alpha
Helix 175	AT4	C	751	760	Right-handed alpha
Helix 176	AT5	C	761	764	Right-handed 310
Helix 177	AT6	C	835	846	Right-handed alpha
Helix 178	AT7	C	847	872	Right-handed alpha
Helix 179	AT8	C	879	902	Right-handed alpha
Helix 180	AT9	C	907	917	Right-handed alpha
Helix 181	AU1	C	918	940	Right-handed alpha
Helix 182	AU2	C	943	968	Right-handed alpha
Helix 183	AU3	C	972	1010	Right-handed alpha
Helix 184	AU4	C	1017	1030	Right-handed alpha
Helix 185	AU5	C	1031	1033	Right-handed 310
Helix 186	AU6	C	1036	1040	Right-handed 310
Helix 187	AU7	C	1066	1094	Right-handed alpha
Helix 188	AU8	C	1094	1120	Right-handed alpha
Helix 189	AU9	C	1124	1126	Right-handed 310
Helix 190	AV1	C	1127	1145	Right-handed alpha
Helix 191	AV2	C	1163	1191	Right-handed alpha
Helix 192	AV3	C	1192	1232	Right-handed alpha

There are 20 sheets in PDB entry 9N1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	99	102	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	240	first strand
Strand 2	A	105	112	parallel
Strand 3	A	119	123	anti-parallel
Strand 4	A	258	259	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	262	263	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	150	155	parallel
Strand 3	A	299	304	parallel
Strand 4	A	326	327	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1047	1049	first strand
Strand 2	A	1055	1057	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	99	102	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	240	first strand
Strand 2	D	105	112	parallel
Strand 3	D	119	123	anti-parallel
Strand 4	D	258	259	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	262	263	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	186	first strand
Strand 2	D	150	155	parallel
Strand 3	D	299	304	parallel
Strand 4	D	326	327	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1047	1049	first strand
Strand 2	D	1055	1057	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	99	102	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	240	first strand
Strand 2	B	105	112	parallel
Strand 3	B	119	123	anti-parallel
Strand 4	B	258	259	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	262	263	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	150	155	parallel
Strand 3	B	299	304	parallel
Strand 4	B	326	327	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1047	1049	first strand
Strand 2	B	1055	1057	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	99	102	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	240	first strand
Strand 2	C	105	112	parallel
Strand 3	C	119	123	anti-parallel
Strand 4	C	258	259	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	262	263	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	186	first strand
Strand 2	C	150	155	parallel
Strand 3	C	299	304	parallel
Strand 4	C	326	327	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1047	1049	first strand
Strand 2	C	1055	1057	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N1J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N1J