Analysis of interatomic Contacts of Structural Units in PDB entry:
9N1Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N1Y entry

There is 1 chain in PDB entry 9N1Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 44THR 1315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9N1Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 52Right-handed 310
Helix 2
AA2
A
55 79Right-handed alpha
Helix 3
AA3
A
79 100Right-handed alpha
Helix 4
AA4
A
114 119Right-handed 310
Helix 5
AA5
A
133 183Right-handed alpha
Helix 6
AA6
A
186 193Right-handed alpha
Helix 7
AA7
A
194 214Right-handed alpha
Helix 8
AA8
A
214 236Right-handed alpha
Helix 9
AA9
A
238 248Right-handed alpha
Helix 10
AB1
A
248 287Right-handed alpha
Helix 11
AB2
A
287 295Right-handed alpha
Helix 12
AB3
A
296 346Right-handed alpha
Helix 13
AB4
A
355 375Right-handed alpha
Helix 14
AB5
A
376 399Right-handed alpha
Helix 15
AB6
A
462 469Right-handed alpha
Helix 16
AB7
A
490 497Right-handed alpha
Helix 17
AB8
A
511 518Right-handed alpha
Helix 18
AB9
A
524 535Right-handed alpha
Helix 19
AC1
A
537 543Right-handed alpha
Helix 20
AC2
A
546 550Right-handed 310
Helix 21
AC3
A
560 575Right-handed alpha
Helix 22
AC4
A
585 589Right-handed 310
Helix 23
AC5
A
590 601Right-handed alpha
Helix 24
AC6
A
616 623Right-handed 310
Helix 25
AC7
A
639 644Right-handed alpha
Helix 26
AC8
A
648 659Right-handed alpha
Helix 27
AC9
A
687 703Right-handed alpha
Helix 28
AD1
A
704 707Right-handed 310
Helix 29
AD2
A
740 748Right-handed alpha
Helix 30
AD3
A
751 783Right-handed alpha
Helix 31
AD4
A
787 840Right-handed alpha
Helix 32
AD5
A
843 849Right-handed alpha
Helix 33
AD6
A
850 852Right-handed 310
Helix 34
AD7
A
853 863Right-handed alpha
Helix 35
AD8
A
863 868Right-handed alpha
Helix 36
AD9
A
869 871Right-handed 310
Helix 37
AE1
A
872 897Right-handed alpha
Helix 38
AE2
A
897 906Right-handed alpha
Helix 39
AE3
A
907 946Right-handed alpha
Helix 40
AE4
A
946 953Right-handed alpha
Helix 41
AE5
A
955 967Right-handed alpha
Helix 42
AE6
A
967 1009Right-handed alpha
Helix 43
AE7
A
1013 1035Right-handed alpha
Helix 44
AE8
A
1037 1056Right-handed alpha
Helix 45
AE9
A
1120 1127Right-handed alpha
Helix 46
AF1
A
1145 1147Right-handed 310
Helix 47
AF2
A
1148 1154Right-handed alpha
Helix 48
AF3
A
1169 1176Right-handed alpha
Helix 49
AF4
A
1177 1179Right-handed 310
Helix 50
AF5
A
1184 1195Right-handed alpha
Helix 51
AF6
A
1197 1203Right-handed alpha
Helix 52
AF7
A
1206 1210Right-handed 310
Helix 53
AF8
A
1212 1216Right-handed 310
Helix 54
AF9
A
1220 1235Right-handed alpha
Helix 55
AG1
A
1250 1265Right-handed alpha
Helix 56
AG2
A
1277 1282Right-handed alpha
Helix 57
AG3
A
1299 1306Right-handed alpha
Helix 58
AG4
A
1308 1315Right-handed 310
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There are 6 sheets in PDB entry 9N1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 441first strand
Strand 2
A
420 427anti-parallel
Strand 3
A
444 445anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 441first strand
Strand 2
A
420 427anti-parallel
Strand 3
A
476 481anti-parallel
Strand 4
A
484 485anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 501first strand
Strand 2
A
579 583parallel
Strand 3
A
609 613parallel
Strand 4
A
450 454parallel
Strand 5
A
625 630parallel
Strand 6
A
633 634anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1096 1099first strand
Strand 2
A
1078 1085anti-parallel
Strand 3
A
1102 1103anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1096 1099first strand
Strand 2
A
1078 1085anti-parallel
Strand 3
A
1134 1139anti-parallel
Strand 4
A
1142 1143anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1159first strand
Strand 2
A
1239 1243parallel
Strand 3
A
1269 1273parallel
Strand 4
A
1108 1111parallel
Strand 5
A
1286 1287parallel
Strand 6
A
1297 1298anti-parallel
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