Analysis of interatomic Contacts of Structural Units in PDB entry:
9N3Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N3Y entry

There are 12 chains in PDB entry 9N3Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 2	PRO 220
H	MET 1	ASN 226
I	G 1	G 61
J	T 4	G 51
K	C 4	A 51
A	MET 1	ASN 241
C	MET 1	SER 344
D	MET 1	GLU 347
E	MET 1	ALA 345
F	MET 1	ALA 345
G	MET 1	LYS 346
L	ALA 105	ALA 726

There are102 helices in PDB entry 9N3Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	22	40	Right-handed alpha
Helix 2	AA2	B	89	100	Right-handed alpha
Helix 3	AA3	B	138	148	Right-handed alpha
Helix 4	AA4	B	176	180	Right-handed 310
Helix 5	AA5	H	15	27	Right-handed alpha
Helix 6	AA6	H	28	30	Right-handed 310
Helix 7	AA7	H	31	39	Right-handed alpha
Helix 8	AA8	H	69	95	Right-handed alpha
Helix 9	AA9	H	132	139	Right-handed alpha
Helix 10	AB1	H	140	164	Right-handed alpha
Helix 11	AB2	A	5	10	Right-handed alpha
Helix 12	AB3	A	54	58	Right-handed 310
Helix 13	AB4	A	68	73	Right-handed alpha
Helix 14	AB5	A	74	81	Right-handed alpha
Helix 15	AB6	A	96	105	Right-handed alpha
Helix 16	AB7	A	149	164	Right-handed alpha
Helix 17	AB8	A	189	196	Right-handed alpha
Helix 18	AB9	A	197	207	Right-handed alpha
Helix 19	AC1	A	208	219	Right-handed alpha
Helix 20	AC2	A	232	241	Right-handed alpha
Helix 21	AC3	C	66	82	Right-handed alpha
Helix 22	AC4	C	82	91	Right-handed alpha
Helix 23	AC5	C	95	104	Right-handed alpha
Helix 24	AC6	C	117	126	Right-handed alpha
Helix 25	AC7	C	127	133	Right-handed alpha
Helix 26	AC8	C	135	139	Right-handed 310
Helix 27	AC9	C	153	157	Right-handed 310
Helix 28	AD1	C	183	188	Right-handed 310
Helix 29	AD2	C	200	223	Right-handed alpha
Helix 30	AD3	C	268	282	Right-handed alpha
Helix 31	AD4	C	283	285	Right-handed 310
Helix 32	AD5	C	319	332	Right-handed alpha
Helix 33	AD6	C	334	343	Right-handed alpha
Helix 34	AD7	D	66	82	Right-handed alpha
Helix 35	AD8	D	82	89	Right-handed alpha
Helix 36	AD9	D	95	105	Right-handed alpha
Helix 37	AE1	D	117	126	Right-handed alpha
Helix 38	AE2	D	127	133	Right-handed alpha
Helix 39	AE3	D	154	158	Right-handed 310
Helix 40	AE4	D	200	223	Right-handed alpha
Helix 41	AE5	D	268	281	Right-handed alpha
Helix 42	AE6	D	319	332	Right-handed alpha
Helix 43	AE7	D	335	343	Right-handed alpha
Helix 44	AE8	E	66	82	Right-handed alpha
Helix 45	AE9	E	82	91	Right-handed alpha
Helix 46	AF1	E	95	105	Right-handed alpha
Helix 47	AF2	E	117	127	Right-handed alpha
Helix 48	AF3	E	127	133	Right-handed alpha
Helix 49	AF4	E	153	157	Right-handed 310
Helix 50	AF5	E	164	168	Right-handed 310
Helix 51	AF6	E	190	194	Right-handed 310
Helix 52	AF7	E	200	217	Right-handed alpha
Helix 53	AF8	E	268	281	Right-handed alpha
Helix 54	AF9	E	319	330	Right-handed alpha
Helix 55	AG1	E	334	343	Right-handed alpha
Helix 56	AG2	F	66	82	Right-handed alpha
Helix 57	AG3	F	82	91	Right-handed alpha
Helix 58	AG4	F	95	105	Right-handed alpha
Helix 59	AG5	F	117	127	Right-handed alpha
Helix 60	AG6	F	127	133	Right-handed alpha
Helix 61	AG7	F	183	189	Right-handed alpha
Helix 62	AG8	F	190	195	Right-handed alpha
Helix 63	AG9	F	200	219	Right-handed alpha
Helix 64	AH1	F	268	280	Right-handed alpha
Helix 65	AH2	F	290	294	Right-handed 310
Helix 66	AH3	F	319	331	Right-handed alpha
Helix 67	AH4	F	335	343	Right-handed alpha
Helix 68	AH5	G	66	82	Right-handed alpha
Helix 69	AH6	G	82	89	Right-handed alpha
Helix 70	AH7	G	95	105	Right-handed alpha
Helix 71	AH8	G	117	126	Right-handed alpha
Helix 72	AH9	G	153	157	Right-handed 310
Helix 73	AI1	G	268	281	Right-handed alpha
Helix 74	AI2	G	319	332	Right-handed alpha
Helix 75	AI3	G	334	343	Right-handed alpha
Helix 76	AI4	L	118	132	Right-handed alpha
Helix 77	AI5	L	144	159	Right-handed alpha
Helix 78	AI6	L	168	182	Right-handed alpha
Helix 79	AI7	L	182	188	Right-handed alpha
Helix 80	AI8	L	201	212	Right-handed alpha
Helix 81	AI9	L	214	224	Right-handed alpha
Helix 82	AJ1	L	246	254	Right-handed alpha
Helix 83	AJ2	L	271	284	Right-handed alpha
Helix 84	AJ3	L	295	305	Right-handed alpha
Helix 85	AJ4	L	338	340	Right-handed 310
Helix 86	AJ5	L	341	349	Right-handed alpha
Helix 87	AJ6	L	355	362	Right-handed alpha
Helix 88	AJ7	L	366	391	Right-handed alpha
Helix 89	AJ8	L	409	419	Right-handed alpha
Helix 90	AJ9	L	426	446	Right-handed alpha
Helix 91	AK1	L	470	480	Right-handed alpha
Helix 92	AK2	L	498	506	Right-handed alpha
Helix 93	AK3	L	508	510	Right-handed 310
Helix 94	AK4	L	541	558	Right-handed alpha
Helix 95	AK5	L	569	581	Right-handed alpha
Helix 96	AK6	L	600	610	Right-handed alpha
Helix 97	AK7	L	619	623	Right-handed 310
Helix 98	AK8	L	636	640	Right-handed 310
Helix 99	AK9	L	658	668	Right-handed alpha
Helix 100	AL1	L	668	686	Right-handed alpha
Helix 101	AL2	L	703	708	Right-handed alpha
Helix 102	AL3	L	713	724	Right-handed alpha

There are 39 sheets in PDB entry 9N3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	B	119	133	anti-parallel
Strand 3	B	72	86	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	B	119	133	anti-parallel
Strand 3	B	4	10	anti-parallel
Strand 4	B	162	169	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	65	66	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	213	217	anti-parallel
Strand 3	B	196	200	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	60	first strand
Strand 2	H	63	68	anti-parallel
Strand 3	H	2	9	anti-parallel
Strand 4	H	102	109	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	123	first strand
Strand 2	H	200	209	anti-parallel
Strand 3	H	173	177	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	127	first strand
Strand 2	H	194	198	anti-parallel
Strand 3	H	180	184	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	212	213	first strand
Strand 2	H	224	225	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	A	42	45	anti-parallel
Strand 3	A	64	66	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	93	first strand
Strand 2	A	84	86	anti-parallel
Strand 3	A	113	116	anti-parallel
Strand 4	A	137	141	parallel
Strand 5	A	144	148	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	146	first strand
Strand 2	C	257	264	anti-parallel
Strand 3	C	150	151	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	146	first strand
Strand 2	C	257	264	anti-parallel
Strand 3	C	2	9	anti-parallel
Strand 4	C	298	305	anti-parallel
Strand 5	C	308	309	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	38	41	anti-parallel
Strand 3	C	245	252	parallel
Strand 4	C	174	181	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	50	first strand
Strand 2	C	58	63	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	312	first strand
Strand 2	C	315	316	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	146	first strand
Strand 2	D	257	264	anti-parallel
Strand 3	D	150	151	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	146	first strand
Strand 2	D	257	264	anti-parallel
Strand 3	D	2	9	anti-parallel
Strand 4	D	298	305	anti-parallel
Strand 5	D	308	309	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	23	first strand
Strand 2	D	38	41	anti-parallel
Strand 3	D	247	252	parallel
Strand 4	D	174	179	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	52	first strand
Strand 2	D	56	63	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	151	first strand
Strand 2	E	257	264	anti-parallel
Strand 3	E	2	9	anti-parallel
Strand 4	E	298	305	anti-parallel
Strand 5	E	308	309	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	23	first strand
Strand 2	E	38	41	anti-parallel
Strand 3	E	245	252	parallel
Strand 4	E	174	181	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	53	first strand
Strand 2	E	56	63	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	135	first strand
Strand 2	E	140	141	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	312	first strand
Strand 2	E	315	316	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	146	first strand
Strand 2	F	257	264	anti-parallel
Strand 3	F	150	151	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	146	first strand
Strand 2	F	257	264	anti-parallel
Strand 3	F	2	9	anti-parallel
Strand 4	F	298	305	anti-parallel
Strand 5	F	308	309	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	23	first strand
Strand 2	F	38	41	anti-parallel
Strand 3	F	246	252	parallel
Strand 4	F	174	180	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	51	first strand
Strand 2	F	57	63	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	135	first strand
Strand 2	F	140	141	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	311	312	first strand
Strand 2	F	315	316	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	146	first strand
Strand 2	G	258	264	anti-parallel
Strand 3	G	150	151	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	146	first strand
Strand 2	G	258	264	anti-parallel
Strand 3	G	2	9	anti-parallel
Strand 4	G	298	305	anti-parallel
Strand 5	G	308	309	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	23	first strand
Strand 2	G	38	40	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	53	first strand
Strand 2	G	56	63	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	174	176	first strand
Strand 2	G	250	252	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	335	336	first strand
Strand 2	L	484	488	parallel
Strand 3	L	134	138	parallel
Strand 4	L	512	514	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	163	167	first strand
Strand 2	L	290	294	parallel
Strand 3	L	190	191	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	350	352	first strand
Strand 2	L	464	466	anti-parallel
Strand 3	L	449	451	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	527	530	first strand
Strand 2	L	697	701	parallel
Strand 3	L	645	648	parallel
Strand 4	L	563	566	parallel
Strand 5	L	615	617	parallel
Strand 6	L	588	590	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N3Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N3Y