Analysis of interatomic Contacts of Structural Units in PDB entry:
9N46

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N46 entry

There are 3 chains in PDB entry 9N46 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LYS 256
A	ALA 258	ARG 270
A	ALA 272	VAL 328

There are145 helices in PDB entry 9N46. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	14	Right-handed alpha
Helix 2	AA2	A	29	33	Right-handed 310
Helix 3	AA3	A	34	52	Right-handed alpha
Helix 4	AA4	A	84	90	Right-handed 310
Helix 5	AA5	A	91	103	Right-handed alpha
Helix 6	AA6	A	109	119	Right-handed alpha
Helix 7	AA7	A	125	140	Right-handed alpha
Helix 8	AA8	A	169	174	Right-handed alpha
Helix 9	AA9	A	175	176	Right-handed 310
Helix 10	AB1	A	177	181	Right-handed 310
Helix 11	AB2	A	183	188	Right-handed alpha
Helix 12	AB3	A	189	201	Right-handed alpha
Helix 13	AB4	A	211	218	Right-handed alpha
Helix 14	AB5	A	221	239	Right-handed alpha
Helix 15	AB6	A	245	257	Right-handed alpha
Helix 16	AB7	A	268	272	Right-handed 310
Helix 17	AB8	A	277	281	Right-handed 310
Helix 18	AB9	A	282	290	Right-handed alpha
Helix 19	AC1	A	291	295	Right-handed 310
Helix 20	AC2	A	299	317	Right-handed alpha
Helix 21	AC3	A	330	336	Right-handed alpha
Helix 22	AC4	A	341	358	Right-handed alpha
Helix 23	AC5	A	366	388	Right-handed alpha
Helix 24	AC6	A	388	395	Right-handed alpha
Helix 25	AC7	A	397	418	Right-handed alpha
Helix 26	AC8	A	419	439	Right-handed alpha
Helix 27	AC9	A	447	458	Right-handed alpha
Helix 28	AD1	A	467	471	Right-handed 310
Helix 29	AD2	A	475	479	Right-handed 310
Helix 30	AD3	A	484	500	Right-handed alpha
Helix 31	AD4	A	506	513	Right-handed alpha
Helix 32	AD5	A	524	534	Right-handed alpha
Helix 33	AD6	A	543	547	Right-handed 310
Helix 34	AD7	B	25	28	Right-handed 310
Helix 35	AD8	B	32	44	Right-handed alpha
Helix 36	AD9	B	50	60	Right-handed alpha
Helix 37	AE1	B	78	80	Right-handed 310
Helix 38	AE2	B	81	94	Right-handed alpha
Helix 39	AE3	B	107	109	Right-handed 310
Helix 40	AE4	B	117	123	Right-handed alpha
Helix 41	AE5	B	128	147	Right-handed alpha
Helix 42	AE6	B	152	162	Right-handed alpha
Helix 43	AE7	B	181	185	Right-handed 310
Helix 44	AE8	B	190	194	Right-handed 310
Helix 45	AE9	B	196	204	Right-handed alpha
Helix 46	AF1	B	207	226	Right-handed alpha
Helix 47	AF2	B	230	232	Right-handed 310
Helix 48	AF3	B	233	246	Right-handed alpha
Helix 49	AF4	B	247	249	Right-handed 310
Helix 50	AF5	B	250	260	Right-handed alpha
Helix 51	AF6	B	264	279	Right-handed alpha
Helix 52	AF7	B	298	322	Right-handed alpha
Helix 53	AF8	B	323	325	Right-handed 310
Helix 54	AF9	B	326	343	Right-handed alpha
Helix 55	AG1	B	346	349	Right-handed 310
Helix 56	AG2	B	350	364	Right-handed alpha
Helix 57	AG3	B	371	375	Right-handed 310
Helix 58	AG4	B	389	400	Right-handed alpha
Helix 59	AG5	B	407	412	Right-handed alpha
Helix 60	AG6	B	412	420	Right-handed alpha
Helix 61	AG7	B	422	427	Right-handed alpha
Helix 62	AG8	B	427	440	Right-handed alpha
Helix 63	AG9	C	9	20	Right-handed alpha
Helix 64	AH1	C	32	41	Right-handed alpha
Helix 65	AH2	C	55	59	Right-handed 310
Helix 66	AH3	C	64	70	Right-handed alpha
Helix 67	AH4	C	73	79	Right-handed alpha
Helix 68	AH5	C	97	109	Right-handed alpha
Helix 69	AH6	C	127	140	Right-handed alpha
Helix 70	AH7	C	206	214	Right-handed alpha
Helix 71	AH8	C	223	226	Right-handed 310
Helix 72	AH9	C	227	247	Right-handed alpha
Helix 73	AI1	a	6	14	Right-handed alpha
Helix 74	AI2	a	29	33	Right-handed 310
Helix 75	AI3	a	34	52	Right-handed alpha
Helix 76	AI4	a	84	90	Right-handed 310
Helix 77	AI5	a	91	103	Right-handed alpha
Helix 78	AI6	a	109	119	Right-handed alpha
Helix 79	AI7	a	125	140	Right-handed alpha
Helix 80	AI8	a	154	159	Right-handed 310
Helix 81	AI9	a	169	174	Right-handed alpha
Helix 82	AJ1	a	175	176	Right-handed 310
Helix 83	AJ2	a	177	181	Right-handed 310
Helix 84	AJ3	a	183	188	Right-handed alpha
Helix 85	AJ4	a	189	201	Right-handed alpha
Helix 86	AJ5	a	211	218	Right-handed alpha
Helix 87	AJ6	a	221	240	Right-handed alpha
Helix 88	AJ7	a	245	257	Right-handed alpha
Helix 89	AJ8	a	268	272	Right-handed 310
Helix 90	AJ9	a	277	281	Right-handed 310
Helix 91	AK1	a	282	290	Right-handed alpha
Helix 92	AK2	a	291	295	Right-handed 310
Helix 93	AK3	a	299	318	Right-handed alpha
Helix 94	AK4	a	330	336	Right-handed alpha
Helix 95	AK5	a	341	358	Right-handed alpha
Helix 96	AK6	a	366	388	Right-handed alpha
Helix 97	AK7	a	388	395	Right-handed alpha
Helix 98	AK8	a	397	418	Right-handed alpha
Helix 99	AK9	a	419	439	Right-handed alpha
Helix 100	AL1	a	447	458	Right-handed alpha
Helix 101	AL2	a	467	471	Right-handed 310
Helix 102	AL3	a	475	479	Right-handed 310
Helix 103	AL4	a	484	500	Right-handed alpha
Helix 104	AL5	a	506	513	Right-handed alpha
Helix 105	AL6	a	524	534	Right-handed alpha
Helix 106	AL7	a	543	547	Right-handed 310
Helix 107	AL8	b	25	28	Right-handed 310
Helix 108	AL9	b	32	44	Right-handed alpha
Helix 109	AM1	b	49	60	Right-handed alpha
Helix 110	AM2	b	78	80	Right-handed 310
Helix 111	AM3	b	81	94	Right-handed alpha
Helix 112	AM4	b	117	123	Right-handed alpha
Helix 113	AM5	b	128	147	Right-handed alpha
Helix 114	AM6	b	149	162	Right-handed alpha
Helix 115	AM7	b	181	185	Right-handed 310
Helix 116	AM8	b	190	195	Right-handed 310
Helix 117	AM9	b	196	204	Right-handed alpha
Helix 118	AN1	b	207	226	Right-handed alpha
Helix 119	AN2	b	230	232	Right-handed 310
Helix 120	AN3	b	233	246	Right-handed alpha
Helix 121	AN4	b	247	249	Right-handed 310
Helix 122	AN5	b	250	260	Right-handed alpha
Helix 123	AN6	b	264	279	Right-handed alpha
Helix 124	AN7	b	298	322	Right-handed alpha
Helix 125	AN8	b	323	325	Right-handed 310
Helix 126	AN9	b	326	343	Right-handed alpha
Helix 127	AO1	b	346	349	Right-handed 310
Helix 128	AO2	b	350	364	Right-handed alpha
Helix 129	AO3	b	371	375	Right-handed 310
Helix 130	AO4	b	389	399	Right-handed alpha
Helix 131	AO5	b	407	412	Right-handed alpha
Helix 132	AO6	b	412	420	Right-handed alpha
Helix 133	AO7	b	422	427	Right-handed alpha
Helix 134	AO8	b	427	440	Right-handed alpha
Helix 135	AO9	b	441	443	Right-handed 310
Helix 136	AP1	c	9	20	Right-handed alpha
Helix 137	AP2	c	32	41	Right-handed alpha
Helix 138	AP3	c	55	59	Right-handed 310
Helix 139	AP4	c	64	70	Right-handed alpha
Helix 140	AP5	c	73	79	Right-handed alpha
Helix 141	AP6	c	97	109	Right-handed alpha
Helix 142	AP7	c	127	140	Right-handed alpha
Helix 143	AP8	c	206	214	Right-handed alpha
Helix 144	AP9	c	223	226	Right-handed 310
Helix 145	AQ1	c	227	247	Right-handed alpha

There are 14 sheets in PDB entry 9N46. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	80	82	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	167	first strand
Strand 2	A	204	209	anti-parallel
Strand 3	A	104	108	anti-parallel
Strand 4	A	260	261	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	17	23	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	106	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	45	49	anti-parallel
Strand 4	B	175	176	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	288	first strand
Strand 2	B	291	295	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	121	126	anti-parallel
Strand 3	C	82	89	anti-parallel
Strand 4	C	148	150	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	184	188	anti-parallel
Strand 3	C	194	202	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	71	73	first strand
Strand 2	a	80	82	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	162	167	first strand
Strand 2	a	204	209	anti-parallel
Strand 3	a	104	108	anti-parallel
Strand 4	a	260	261	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	7	11	first strand
Strand 2	b	17	23	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	102	106	first strand
Strand 2	b	111	115	anti-parallel
Strand 3	b	45	48	anti-parallel
Strand 4	b	175	176	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	283	288	first strand
Strand 2	b	291	295	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	113	116	first strand
Strand 2	c	121	126	anti-parallel
Strand 3	c	82	89	anti-parallel
Strand 4	c	148	150	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	175	178	first strand
Strand 2	c	183	188	anti-parallel
Strand 3	c	194	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N46

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N46