Analysis of interatomic Contacts of Structural Units in PDB entry:
9N4M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N4M entry

There are 4 chains in PDB entry 9N4M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 33	GLN 872
B	THR 33	GLN 872
C	THR 33	GLN 872
D	THR 33	GLN 872

There are126 helices in PDB entry 9N4M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	67	Right-handed alpha
Helix 2	AA2	A	87	100	Right-handed alpha
Helix 3	AA3	A	114	126	Right-handed alpha
Helix 4	AA4	A	155	168	Right-handed alpha
Helix 5	AA5	A	180	185	Right-handed alpha
Helix 6	AA6	A	185	190	Right-handed alpha
Helix 7	AA7	A	191	194	Right-handed 310
Helix 8	AA8	A	211	222	Right-handed alpha
Helix 9	AA9	A	234	239	Right-handed alpha
Helix 10	AB1	A	241	246	Right-handed alpha
Helix 11	AB2	A	287	298	Right-handed alpha
Helix 12	AB3	A	317	334	Right-handed alpha
Helix 13	AB4	A	355	364	Right-handed alpha
Helix 14	AB5	A	464	474	Right-handed alpha
Helix 15	AB6	A	501	505	Right-handed alpha
Helix 16	AB7	A	520	527	Right-handed alpha
Helix 17	AB8	A	562	576	Right-handed alpha
Helix 18	AB9	A	576	585	Right-handed alpha
Helix 19	AC1	A	607	618	Right-handed alpha
Helix 20	AC2	A	630	634	Right-handed 310
Helix 21	AC3	A	635	648	Right-handed alpha
Helix 22	AC4	A	651	660	Right-handed alpha
Helix 23	AC5	A	660	665	Right-handed alpha
Helix 24	AC6	A	671	676	Right-handed alpha
Helix 25	AC7	A	688	696	Right-handed alpha
Helix 26	AC8	A	701	712	Right-handed alpha
Helix 27	AC9	A	722	731	Right-handed alpha
Helix 28	AD1	A	743	748	Right-handed alpha
Helix 29	AD2	A	773	788	Right-handed alpha
Helix 30	AD3	A	789	794	Right-handed alpha
Helix 31	AD4	A	794	799	Right-handed alpha
Helix 32	AD5	A	816	821	Right-handed alpha
Helix 33	AD6	A	822	853	Right-handed alpha
Helix 34	AD7	A	857	868	Right-handed alpha
Helix 35	AD8	B	51	67	Right-handed alpha
Helix 36	AD9	B	87	100	Right-handed alpha
Helix 37	AE1	B	114	123	Right-handed alpha
Helix 38	AE2	B	155	164	Right-handed alpha
Helix 39	AE3	B	178	183	Right-handed 310
Helix 40	AE4	B	185	190	Right-handed alpha
Helix 41	AE5	B	191	194	Right-handed 310
Helix 42	AE6	B	211	221	Right-handed alpha
Helix 43	AE7	B	232	245	Right-handed alpha
Helix 44	AE8	B	286	299	Right-handed alpha
Helix 45	AE9	B	317	336	Right-handed alpha
Helix 46	AF1	B	355	364	Right-handed alpha
Helix 47	AF2	B	461	474	Right-handed alpha
Helix 48	AF3	B	501	507	Right-handed alpha
Helix 49	AF4	B	520	527	Right-handed alpha
Helix 50	AF5	B	556	560	Right-handed 310
Helix 51	AF6	B	561	572	Right-handed alpha
Helix 52	AF7	B	572	585	Right-handed alpha
Helix 53	AF8	B	607	620	Right-handed alpha
Helix 54	AF9	B	630	632	Right-handed 310
Helix 55	AG1	B	633	660	Right-handed alpha
Helix 56	AG2	B	690	696	Right-handed alpha
Helix 57	AG3	B	700	710	Right-handed alpha
Helix 58	AG4	B	720	731	Right-handed alpha
Helix 59	AG5	B	741	746	Right-handed alpha
Helix 60	AG6	B	774	788	Right-handed alpha
Helix 61	AG7	B	789	799	Right-handed alpha
Helix 62	AG8	B	827	853	Right-handed alpha
Helix 63	AG9	B	862	867	Right-handed alpha
Helix 64	AH1	C	51	67	Right-handed alpha
Helix 65	AH2	C	87	100	Right-handed alpha
Helix 66	AH3	C	114	126	Right-handed alpha
Helix 67	AH4	C	155	168	Right-handed alpha
Helix 68	AH5	C	180	185	Right-handed alpha
Helix 69	AH6	C	185	190	Right-handed alpha
Helix 70	AH7	C	191	194	Right-handed 310
Helix 71	AH8	C	211	222	Right-handed alpha
Helix 72	AH9	C	234	239	Right-handed alpha
Helix 73	AI1	C	241	246	Right-handed alpha
Helix 74	AI2	C	287	298	Right-handed alpha
Helix 75	AI3	C	317	334	Right-handed alpha
Helix 76	AI4	C	355	364	Right-handed alpha
Helix 77	AI5	C	464	474	Right-handed alpha
Helix 78	AI6	C	501	505	Right-handed alpha
Helix 79	AI7	C	520	527	Right-handed alpha
Helix 80	AI8	C	562	576	Right-handed alpha
Helix 81	AI9	C	576	585	Right-handed alpha
Helix 82	AJ1	C	607	618	Right-handed alpha
Helix 83	AJ2	C	630	634	Right-handed 310
Helix 84	AJ3	C	635	648	Right-handed alpha
Helix 85	AJ4	C	651	660	Right-handed alpha
Helix 86	AJ5	C	660	665	Right-handed alpha
Helix 87	AJ6	C	671	676	Right-handed alpha
Helix 88	AJ7	C	688	696	Right-handed alpha
Helix 89	AJ8	C	701	712	Right-handed alpha
Helix 90	AJ9	C	722	731	Right-handed alpha
Helix 91	AK1	C	743	748	Right-handed alpha
Helix 92	AK2	C	773	788	Right-handed alpha
Helix 93	AK3	C	789	794	Right-handed alpha
Helix 94	AK4	C	794	799	Right-handed alpha
Helix 95	AK5	C	816	821	Right-handed alpha
Helix 96	AK6	C	822	853	Right-handed alpha
Helix 97	AK7	C	857	868	Right-handed alpha
Helix 98	AK8	D	51	67	Right-handed alpha
Helix 99	AK9	D	87	100	Right-handed alpha
Helix 100	AL1	D	114	123	Right-handed alpha
Helix 101	AL2	D	155	164	Right-handed alpha
Helix 102	AL3	D	178	183	Right-handed 310
Helix 103	AL4	D	185	190	Right-handed alpha
Helix 104	AL5	D	191	194	Right-handed 310
Helix 105	AL6	D	211	221	Right-handed alpha
Helix 106	AL7	D	232	245	Right-handed alpha
Helix 107	AL8	D	286	299	Right-handed alpha
Helix 108	AL9	D	317	336	Right-handed alpha
Helix 109	AM1	D	355	364	Right-handed alpha
Helix 110	AM2	D	461	474	Right-handed alpha
Helix 111	AM3	D	501	507	Right-handed alpha
Helix 112	AM4	D	520	527	Right-handed alpha
Helix 113	AM5	D	556	560	Right-handed 310
Helix 114	AM6	D	561	572	Right-handed alpha
Helix 115	AM7	D	572	585	Right-handed alpha
Helix 116	AM8	D	607	620	Right-handed alpha
Helix 117	AM9	D	630	632	Right-handed 310
Helix 118	AN1	D	633	660	Right-handed alpha
Helix 119	AN2	D	690	696	Right-handed alpha
Helix 120	AN3	D	700	710	Right-handed alpha
Helix 121	AN4	D	720	731	Right-handed alpha
Helix 122	AN5	D	741	746	Right-handed alpha
Helix 123	AN6	D	774	788	Right-handed alpha
Helix 124	AN7	D	789	799	Right-handed alpha
Helix 125	AN8	D	827	853	Right-handed alpha
Helix 126	AN9	D	862	867	Right-handed alpha

There are 38 sheets in PDB entry 9N4M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	77	79	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	82	83	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	147	148	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	175	176	parallel
Strand 3	A	225	229	parallel
Strand 4	A	253	256	parallel
Strand 5	A	276	280	parallel
Strand 6	A	390	394	anti-parallel
Strand 7	A	399	401	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	435	first strand
Strand 2	A	479	480	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	490	first strand
Strand 2	A	499	500	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	765	767	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	735	first strand
Strand 2	A	541	543	anti-parallel
Strand 3	A	752	754	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	685	first strand
Strand 2	A	717	718	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	42	first strand
Strand 2	B	76	82	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	131	first strand
Strand 2	B	146	148	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	174	176	parallel
Strand 3	B	225	228	parallel
Strand 4	B	253	254	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	280	first strand
Strand 2	B	390	395	anti-parallel
Strand 3	B	398	403	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	410	411	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	433	first strand
Strand 2	B	477	478	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	459	460	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	498	500	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	529	first strand
Strand 2	B	767	768	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	737	738	first strand
Strand 2	B	538	543	anti-parallel
Strand 3	B	752	755	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	77	79	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	82	83	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	147	148	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	175	176	parallel
Strand 3	C	225	229	parallel
Strand 4	C	253	256	parallel
Strand 5	C	276	280	parallel
Strand 6	C	390	394	anti-parallel
Strand 7	C	399	401	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	434	435	first strand
Strand 2	C	479	480	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	490	first strand
Strand 2	C	499	500	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	513	515	first strand
Strand 2	C	765	767	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	735	first strand
Strand 2	C	541	543	anti-parallel
Strand 3	C	752	754	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	684	685	first strand
Strand 2	C	717	718	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	42	first strand
Strand 2	D	76	82	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	146	148	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	174	176	parallel
Strand 3	D	225	228	parallel
Strand 4	D	253	254	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	280	first strand
Strand 2	D	390	395	anti-parallel
Strand 3	D	398	403	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	410	411	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	432	433	first strand
Strand 2	D	477	478	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	446	first strand
Strand 2	D	459	460	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	498	500	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	529	first strand
Strand 2	D	767	768	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	737	738	first strand
Strand 2	D	538	543	anti-parallel
Strand 3	D	752	755	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N4M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N4M