Analysis of interatomic Contacts of Structural Units in PDB entry:
9N58

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N58 entry

There are 4 chains in PDB entry 9N58 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 51	LYS 330
B	ASP 51	LYS 330
C	ASP 51	ALA 329
D	ASP 51	ALA 329

There are 48 helices in PDB entry 9N58. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	93	Right-handed 310
Helix 2	AA2	A	102	111	Right-handed alpha
Helix 3	AA3	A	139	143	Right-handed 310
Helix 4	AA4	A	149	165	Right-handed alpha
Helix 5	AA5	A	175	179	Right-handed 310
Helix 6	AA6	A	193	200	Right-handed alpha
Helix 7	AA7	A	217	231	Right-handed alpha
Helix 8	AA8	A	245	261	Right-handed alpha
Helix 9	AA9	A	265	276	Right-handed alpha
Helix 10	AB1	A	290	313	Right-handed alpha
Helix 11	AB2	A	314	317	Right-handed 310
Helix 12	AB3	A	320	327	Right-handed alpha
Helix 13	AB4	B	90	93	Right-handed 310
Helix 14	AB5	B	102	111	Right-handed alpha
Helix 15	AB6	B	139	143	Right-handed 310
Helix 16	AB7	B	149	165	Right-handed alpha
Helix 17	AB8	B	175	179	Right-handed 310
Helix 18	AB9	B	193	200	Right-handed alpha
Helix 19	AC1	B	217	231	Right-handed alpha
Helix 20	AC2	B	245	261	Right-handed alpha
Helix 21	AC3	B	265	276	Right-handed alpha
Helix 22	AC4	B	291	313	Right-handed alpha
Helix 23	AC5	B	314	317	Right-handed 310
Helix 24	AC6	B	320	327	Right-handed alpha
Helix 25	AC7	C	90	93	Right-handed 310
Helix 26	AC8	C	102	111	Right-handed alpha
Helix 27	AC9	C	139	143	Right-handed 310
Helix 28	AD1	C	149	165	Right-handed alpha
Helix 29	AD2	C	175	179	Right-handed 310
Helix 30	AD3	C	193	200	Right-handed alpha
Helix 31	AD4	C	217	230	Right-handed alpha
Helix 32	AD5	C	245	261	Right-handed alpha
Helix 33	AD6	C	265	276	Right-handed alpha
Helix 34	AD7	C	291	313	Right-handed alpha
Helix 35	AD8	C	314	317	Right-handed 310
Helix 36	AD9	C	320	326	Right-handed alpha
Helix 37	AE1	D	90	93	Right-handed 310
Helix 38	AE2	D	102	111	Right-handed alpha
Helix 39	AE3	D	139	143	Right-handed 310
Helix 40	AE4	D	149	165	Right-handed alpha
Helix 41	AE5	D	175	179	Right-handed 310
Helix 42	AE6	D	193	200	Right-handed alpha
Helix 43	AE7	D	217	230	Right-handed alpha
Helix 44	AE8	D	245	261	Right-handed alpha
Helix 45	AE9	D	265	276	Right-handed alpha
Helix 46	AF1	D	290	313	Right-handed alpha
Helix 47	AF2	D	314	317	Right-handed 310
Helix 48	AF3	D	320	326	Right-handed alpha

There are 12 sheets in PDB entry 9N58. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	59	first strand
Strand 2	A	133	138	anti-parallel
Strand 3	A	127	130	anti-parallel
Strand 4	A	191	192	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	95	98	anti-parallel
Strand 3	A	236	240	parallel
Strand 4	A	117	123	parallel
Strand 5	A	204	210	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	184	186	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	59	first strand
Strand 2	B	133	138	anti-parallel
Strand 3	B	127	130	anti-parallel
Strand 4	B	191	192	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	95	98	anti-parallel
Strand 3	B	236	240	parallel
Strand 4	B	117	123	parallel
Strand 5	B	204	210	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	184	186	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	59	first strand
Strand 2	C	133	138	anti-parallel
Strand 3	C	127	130	anti-parallel
Strand 4	C	191	192	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	95	98	anti-parallel
Strand 3	C	236	240	parallel
Strand 4	C	117	123	parallel
Strand 5	C	204	210	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	184	186	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	59	first strand
Strand 2	D	133	138	anti-parallel
Strand 3	D	127	130	anti-parallel
Strand 4	D	191	192	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	95	98	anti-parallel
Strand 3	D	236	240	parallel
Strand 4	D	117	123	parallel
Strand 5	D	204	210	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	172	first strand
Strand 2	D	184	186	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N58

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N58