Analysis of interatomic Contacts of Structural Units in PDB entry:
9N59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N59 entry

There are 2 chains in PDB entry 9N59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 4	GLY 567
B	ILE 4	GLY 567

There are 23 helices in PDB entry 9N59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	34	Right-handed alpha
Helix 2	AA2	A	43	99	Right-handed alpha
Helix 3	AA3	A	104	129	Right-handed alpha
Helix 4	AA4	A	186	194	Right-handed alpha
Helix 5	AA5	A	214	221	Right-handed alpha
Helix 6	AA6	A	257	268	Right-handed alpha
Helix 7	AA7	A	325	336	Right-handed alpha
Helix 8	AA8	A	337	340	Right-handed 310
Helix 9	AA9	A	370	379	Right-handed alpha
Helix 10	AB1	A	479	528	Right-handed alpha
Helix 11	AB2	A	530	558	Right-handed alpha
Helix 12	AB3	A	560	567	Right-handed alpha
Helix 13	AB4	B	7	34	Right-handed alpha
Helix 14	AB5	B	43	99	Right-handed alpha
Helix 15	AB6	B	104	129	Right-handed alpha
Helix 16	AB7	B	186	194	Right-handed alpha
Helix 17	AB8	B	214	221	Right-handed alpha
Helix 18	AB9	B	257	268	Right-handed alpha
Helix 19	AC1	B	325	336	Right-handed alpha
Helix 20	AC2	B	370	378	Right-handed alpha
Helix 21	AC3	B	479	528	Right-handed alpha
Helix 22	AC4	B	530	556	Right-handed alpha
Helix 23	AC5	B	557	566	Right-handed alpha

There are 15 sheets in PDB entry 9N59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	146	first strand
Strand 2	A	154	159	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	184	first strand
Strand 2	A	459	460	anti-parallel
Strand 3	A	466	467	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	204	209	anti-parallel
Strand 3	A	424	431	anti-parallel
Strand 4	A	438	443	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	412	413	anti-parallel
Strand 3	A	419	420	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	298	300	anti-parallel
Strand 3	A	287	292	anti-parallel
Strand 4	A	276	281	anti-parallel
Strand 5	A	346	349	anti-parallel
Strand 6	A	352	356	anti-parallel
Strand 7	A	363	369	anti-parallel
Strand 8	A	248	255	anti-parallel
Strand 9	A	238	243	anti-parallel
Strand 10	A	227	230	anti-parallel
Strand 11	A	383	386	anti-parallel
Strand 12	A	395	398	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	313	314	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	146	first strand
Strand 2	B	154	159	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	197	first strand
Strand 2	B	204	209	anti-parallel
Strand 3	B	424	431	anti-parallel
Strand 4	B	438	443	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	212	first strand
Strand 2	B	412	413	anti-parallel
Strand 3	B	419	420	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	239	first strand
Strand 2	B	227	230	anti-parallel
Strand 3	B	383	386	anti-parallel
Strand 4	B	396	398	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	243	first strand
Strand 2	B	248	253	anti-parallel
Strand 3	B	365	369	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	287	first strand
Strand 2	B	279	282	anti-parallel
Strand 3	B	346	348	anti-parallel
Strand 4	B	353	354	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	300	first strand
Strand 2	B	303	304	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	307	first strand
Strand 2	B	313	314	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	466	467	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N59

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N59