Analysis of interatomic Contacts of Structural Units in PDB entry:
9N5D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N5D entry

There are 14 chains in PDB entry 9N5D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	A 1	C 10
T	T 3	A 18
T	C 20	T 28
N	C 2	A 16
A	GLY 3	ASP 1446
B	ASP 20	SER 1221
C	SER 2	ASP 268
E	GLN 3	MET 215
F	LEU 69	ASP 154
H	SER 2	ARG 146
I	THR 2	THR 119
J	MET 1	PRO 65
K	MET 1	LEU 114
L	LYS 28	ARG 70

There are119 helices in PDB entry 9N5D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	95	105	Right-handed alpha
Helix 3	AA3	A	119	128	Right-handed alpha
Helix 4	AA4	A	130	142	Right-handed alpha
Helix 5	AA5	A	203	213	Right-handed alpha
Helix 6	AA6	A	215	223	Right-handed alpha
Helix 7	AA7	A	230	235	Right-handed alpha
Helix 8	AA8	A	260	282	Right-handed alpha
Helix 9	AA9	A	287	305	Right-handed alpha
Helix 10	AB1	A	324	330	Right-handed alpha
Helix 11	AB2	A	334	340	Right-handed alpha
Helix 12	AB3	A	367	374	Right-handed alpha
Helix 13	AB4	A	384	395	Right-handed alpha
Helix 14	AB5	A	471	473	Right-handed 310
Helix 15	AB6	A	474	479	Right-handed alpha
Helix 16	AB7	A	494	505	Right-handed alpha
Helix 17	AB8	A	514	517	Right-handed 310
Helix 18	AB9	A	525	536	Right-handed alpha
Helix 19	AC1	A	542	553	Right-handed alpha
Helix 20	AC2	A	574	582	Right-handed alpha
Helix 21	AC3	A	618	623	Right-handed alpha
Helix 22	AC4	A	628	636	Right-handed alpha
Helix 23	AC5	A	638	661	Right-handed alpha
Helix 24	AC6	A	665	670	Right-handed alpha
Helix 25	AC7	A	672	699	Right-handed alpha
Helix 26	AC8	A	709	737	Right-handed alpha
Helix 27	AC9	A	741	750	Right-handed alpha
Helix 28	AD1	A	754	763	Right-handed alpha
Helix 29	AD2	A	793	798	Right-handed alpha
Helix 30	AD3	A	809	846	Right-handed alpha
Helix 31	AD4	A	867	871	Right-handed 310
Helix 32	AD5	A	889	898	Right-handed alpha
Helix 33	AD6	A	915	920	Right-handed alpha
Helix 34	AD7	A	922	947	Right-handed alpha
Helix 35	AD8	A	959	971	Right-handed alpha
Helix 36	AD9	A	982	997	Right-handed alpha
Helix 37	AE1	A	1004	1026	Right-handed alpha
Helix 38	AE2	A	1027	1033	Right-handed alpha
Helix 39	AE3	A	1038	1057	Right-handed alpha
Helix 40	AE4	A	1063	1079	Right-handed alpha
Helix 41	AE5	A	1096	1106	Right-handed alpha
Helix 42	AE6	A	1127	1139	Right-handed alpha
Helix 43	AE7	A	1143	1146	Right-handed alpha
Helix 44	AE8	A	1166	1173	Right-handed alpha
Helix 45	AE9	A	1198	1205	Right-handed alpha
Helix 46	AF1	A	1208	1220	Right-handed alpha
Helix 47	AF2	A	1258	1271	Right-handed alpha
Helix 48	AF3	A	1312	1319	Right-handed alpha
Helix 49	AF4	A	1331	1359	Right-handed alpha
Helix 50	AF5	A	1364	1377	Right-handed alpha
Helix 51	AF6	A	1395	1403	Right-handed alpha
Helix 52	AF7	A	1404	1416	Right-handed alpha
Helix 53	AF8	A	1423	1431	Right-handed alpha
Helix 54	AF9	A	1436	1440	Right-handed 310
Helix 55	AG1	B	26	42	Right-handed alpha
Helix 56	AG2	B	44	57	Right-handed alpha
Helix 57	AG3	B	57	65	Right-handed alpha
Helix 58	AG4	B	113	120	Right-handed alpha
Helix 59	AG5	B	179	184	Right-handed 310
Helix 60	AG6	B	185	192	Right-handed alpha
Helix 61	AG7	B	282	289	Right-handed alpha
Helix 62	AG8	B	293	302	Right-handed alpha
Helix 63	AG9	B	307	321	Right-handed alpha
Helix 64	AH1	B	326	333	Right-handed alpha
Helix 65	AH2	B	346	359	Right-handed alpha
Helix 66	AH3	B	370	390	Right-handed alpha
Helix 67	AH4	B	408	435	Right-handed alpha
Helix 68	AH5	B	449	464	Right-handed alpha
Helix 69	AH6	B	487	496	Right-handed alpha
Helix 70	AH7	B	515	519	Right-handed 310
Helix 71	AH8	B	551	561	Right-handed alpha
Helix 72	AH9	B	592	607	Right-handed alpha
Helix 73	AI1	B	654	668	Right-handed alpha
Helix 74	AI2	B	680	687	Right-handed alpha
Helix 75	AI3	B	695	699	Right-handed alpha
Helix 76	AI4	B	706	710	Right-handed 310
Helix 77	AI5	B	744	749	Right-handed 310
Helix 78	AI6	B	750	756	Right-handed alpha
Helix 79	AI7	B	758	762	Right-handed 310
Helix 80	AI8	B	763	777	Right-handed alpha
Helix 81	AI9	B	782	786	Right-handed 310
Helix 82	AJ1	B	808	813	Right-handed alpha
Helix 83	AJ2	B	843	848	Right-handed alpha
Helix 84	AJ3	B	1015	1021	Right-handed alpha
Helix 85	AJ4	B	1022	1039	Right-handed alpha
Helix 86	AJ5	B	1051	1062	Right-handed alpha
Helix 87	AJ6	B	1098	1103	Right-handed alpha
Helix 88	AJ7	B	1131	1142	Right-handed alpha
Helix 89	AJ8	B	1143	1152	Right-handed alpha
Helix 90	AJ9	B	1198	1210	Right-handed alpha
Helix 91	AK1	C	26	40	Right-handed alpha
Helix 92	AK2	C	59	70	Right-handed alpha
Helix 93	AK3	C	76	79	Right-handed 310
Helix 94	AK4	C	114	118	Right-handed 310
Helix 95	AK5	C	167	171	Right-handed 310
Helix 96	AK6	C	196	201	Right-handed alpha
Helix 97	AK7	C	205	209	Right-handed 310
Helix 98	AK8	C	239	267	Right-handed alpha
Helix 99	AK9	E	5	27	Right-handed alpha
Helix 100	AL1	E	31	36	Right-handed alpha
Helix 101	AL2	E	38	47	Right-handed alpha
Helix 102	AL3	E	54	59	Right-handed alpha
Helix 103	AL4	E	65	72	Right-handed alpha
Helix 104	AL5	E	89	104	Right-handed alpha
Helix 105	AL6	E	118	124	Right-handed 310
Helix 106	AL7	E	137	141	Right-handed alpha
Helix 107	AL8	E	142	147	Right-handed 310
Helix 108	AL9	E	157	168	Right-handed alpha
Helix 109	AM1	E	182	188	Right-handed alpha
Helix 110	AM2	F	86	103	Right-handed alpha
Helix 111	AM3	F	116	128	Right-handed alpha
Helix 112	AM4	I	59	65	Right-handed 310
Helix 113	AM5	J	16	29	Right-handed alpha
Helix 114	AM6	J	31	39	Right-handed alpha
Helix 115	AM7	J	43	52	Right-handed alpha
Helix 116	AM8	J	56	63	Right-handed alpha
Helix 117	AM9	K	5	10	Right-handed 310
Helix 118	AN1	K	39	53	Right-handed alpha
Helix 119	AN2	K	82	112	Right-handed alpha

There are 48 sheets in PDB entry 9N5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	B	1212	1217	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	90	first strand
Strand 2	A	236	241	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	177	first strand
Strand 2	A	180	183	anti-parallel
Strand 3	A	200	201	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	B	1129	1130	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	455	460	parallel
Strand 3	A	441	445	anti-parallel
Strand 4	A	486	490	anti-parallel
Strand 5	A	348	355	anti-parallel
Strand 6	A	468	470	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	455	460	parallel
Strand 3	A	441	445	anti-parallel
Strand 4	A	486	490	anti-parallel
Strand 5	A	348	355	anti-parallel
Strand 6	B	1104	1105	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	402	406	anti-parallel
Strand 4	A	412	414	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	518	519	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	541	first strand
Strand 2	A	572	573	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	590	first strand
Strand 2	A	605	608	anti-parallel
Strand 3	A	611	615	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	799	800	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	856	857	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	882	first strand
Strand 2	A	953	957	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1282	1287	first strand
Strand 2	A	1303	1308	anti-parallel
Strand 3	A	1116	1119	anti-parallel
Strand 4	A	1328	1329	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1141	1142	first strand
Strand 2	A	1272	1274	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1224	1228	first strand
Strand 2	A	1237	1242	anti-parallel
Strand 3	A	1191	1197	anti-parallel
Strand 4	A	1147	1154	anti-parallel
Strand 5	I	42	47	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1290	1292	first strand
Strand 2	A	1298	1300	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1442	1445	first strand
Strand 2	F	132	137	anti-parallel
Strand 3	F	143	147	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	71	first strand
Strand 2	B	88	97	anti-parallel
Strand 3	B	125	136	anti-parallel
Strand 4	B	163	171	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	109	111	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	208	212	anti-parallel
Strand 3	B	480	482	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	498	499	parallel
Strand 4	B	536	537	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	234	242	anti-parallel
Strand 3	B	252	259	anti-parallel
Strand 4	B	269	271	anti-parallel
Strand 5	B	280	281	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	638	anti-parallel
Strand 3	B	690	694	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	590	first strand
Strand 2	B	578	582	anti-parallel
Strand 3	B	623	627	parallel
Strand 4	B	614	618	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	640	642	first strand
Strand 2	B	649	651	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	703	704	first strand
Strand 2	B	740	741	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	792	796	first strand
Strand 2	B	853	862	anti-parallel
Strand 3	B	962	972	anti-parallel
Strand 4	B	946	956	anti-parallel
Strand 5	B	904	906	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	792	796	first strand
Strand 2	B	853	862	anti-parallel
Strand 3	B	962	972	anti-parallel
Strand 4	B	946	956	anti-parallel
Strand 5	L	56	58	anti-parallel
Strand 6	L	29	30	anti-parallel
Strand 7	L	37	38	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	805	first strand
Strand 2	B	1042	1043	parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1069	1070	first strand
Strand 2	B	1085	1094	anti-parallel
Strand 3	B	979	982	anti-parallel
Strand 4	B	987	994	anti-parallel
Strand 5	B	838	842	parallel
Strand 6	B	1010	1012	anti-parallel
Strand 7	B	821	827	parallel
Strand 8	B	1085	1094	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	865	866	first strand
Strand 2	B	870	871	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	873	874	first strand
Strand 2	B	914	917	anti-parallel
Strand 3	B	934	936	anti-parallel
Strand 4	B	882	883	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	910	912	first strand
Strand 2	B	939	940	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1001	1002	first strand
Strand 2	B	1072	1073	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1157	1162	first strand
Strand 2	B	1192	1197	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1172	1174	first strand
Strand 2	B	1179	1181	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	13	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	227	233	anti-parallel
Strand 4	C	177	179	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	96	104	anti-parallel
Strand 3	C	152	162	anti-parallel
Strand 4	C	43	54	anti-parallel
Strand 5	L	66	67	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	129	132	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	145	147	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	78	82	anti-parallel
Strand 3	E	107	112	parallel
Strand 4	E	131	136	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	115	116	parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	155	first strand
Strand 2	E	196	201	anti-parallel
Strand 3	E	207	214	anti-parallel
Strand 4	E	177	178	parallel

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There are 9 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	16	first strand
Strand 2	H	23	30	anti-parallel
Strand 3	H	37	43	anti-parallel
Strand 4	H	121	127	anti-parallel
Strand 5	H	111	118	anti-parallel
Strand 6	H	95	108	anti-parallel
Strand 7	H	140	145	anti-parallel
Strand 8	H	54	60	anti-parallel
Strand 9	H	4	16	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	19	first strand
Strand 2	I	24	28	anti-parallel
Strand 3	I	35	37	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	87	first strand
Strand 2	I	99	102	anti-parallel
Strand 3	I	109	111	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N5D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N5D