Analysis of interatomic Contacts of Structural Units in PDB entry:
9N5H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N5H entry

There are 7 chains in PDB entry 9N5H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 554	LYS 1681
B	GLU 1	LYS 221
C	SER 1	GLY 212
D	GLN 1	LYS 219
E	ASP 1	GLY 212
H	GLU 1	LYS 214
L	GLU 1	GLY 212

There are 43 helices in PDB entry 9N5H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	575	579	Right-handed 310
Helix 2	AA2	A	663	667	Right-handed alpha
Helix 3	AA3	A	759	766	Right-handed alpha
Helix 4	AA4	A	823	828	Right-handed alpha
Helix 5	AA5	A	896	900	Right-handed 310
Helix 6	AA6	A	974	979	Right-handed alpha
Helix 7	AA7	A	986	998	Right-handed alpha
Helix 8	AA8	A	1000	1007	Right-handed 310
Helix 9	AA9	A	1011	1015	Right-handed 310
Helix 10	AB1	A	1019	1029	Right-handed alpha
Helix 11	AB2	A	1030	1033	Right-handed 310
Helix 12	AB3	A	1051	1066	Right-handed alpha
Helix 13	AB4	A	1071	1075	Right-handed alpha
Helix 14	AB5	A	1213	1217	Right-handed alpha
Helix 15	AB6	A	1291	1296	Right-handed 310
Helix 16	AB7	A	1356	1364	Right-handed alpha
Helix 17	AB8	A	1410	1413	Right-handed 310
Helix 18	AB9	A	1442	1449	Right-handed 310
Helix 19	AC1	A	1495	1500	Right-handed alpha
Helix 20	AC2	A	1505	1510	Right-handed alpha
Helix 21	AC3	A	1549	1560	Right-handed alpha
Helix 22	AC4	A	1590	1602	Right-handed alpha
Helix 23	AC5	A	1610	1618	Right-handed alpha
Helix 24	AC6	A	1621	1625	Right-handed 310
Helix 25	AC7	A	1652	1666	Right-handed alpha
Helix 26	AC8	A	1667	1669	Right-handed 310
Helix 27	AC9	B	28	32	Right-handed 310
Helix 28	AD1	B	41	43	Right-handed 310
Helix 29	AD2	B	62	65	Right-handed 310
Helix 30	AD3	B	87	91	Right-handed 310
Helix 31	AD4	B	163	165	Right-handed 310
Helix 32	AD5	B	194	196	Right-handed 310
Helix 33	AD6	C	79	83	Right-handed 310
Helix 34	AD7	C	121	127	Right-handed alpha
Helix 35	AD8	C	183	187	Right-handed alpha
Helix 36	AD9	D	190	194	Right-handed 310
Helix 37	AE1	E	121	126	Right-handed alpha
Helix 38	AE2	E	183	189	Right-handed alpha
Helix 39	AE3	H	187	189	Right-handed 310
Helix 40	AE4	H	202	204	Right-handed 310
Helix 41	AE5	L	79	83	Right-handed 310
Helix 42	AE6	L	121	127	Right-handed alpha
Helix 43	AE7	L	183	187	Right-handed alpha

There are 51 sheets in PDB entry 9N5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	583	first strand
Strand 2	A	608	615	parallel
Strand 3	A	720	727	parallel
Strand 4	A	700	707	anti-parallel
Strand 5	A	640	642	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	586	first strand
Strand 2	A	591	594	anti-parallel
Strand 3	A	621	625	parallel
Strand 4	A	687	691	anti-parallel
Strand 5	A	671	672	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	654	first strand
Strand 2	A	657	662	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	675	676	first strand
Strand 2	A	679	680	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	713	first strand
Strand 2	A	716	717	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	735	738	first strand
Strand 2	A	790	794	parallel
Strand 3	A	845	849	anti-parallel
Strand 4	A	832	834	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	784	first strand
Strand 2	A	878	883	parallel
Strand 3	A	859	866	anti-parallel
Strand 4	A	799	802	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	784	first strand
Strand 2	A	878	883	parallel
Strand 3	A	859	866	anti-parallel
Strand 4	A	809	810	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	908	first strand
Strand 2	A	941	948	parallel
Strand 3	A	1123	1130	parallel
Strand 4	A	1108	1115	anti-parallel
Strand 5	A	969	971	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	908	first strand
Strand 2	A	941	948	parallel
Strand 3	A	1123	1130	parallel
Strand 4	A	1108	1115	anti-parallel
Strand 5	A	980	983	anti-parallel
Strand 6	A	1068	1070	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	910	911	first strand
Strand 2	A	919	923	anti-parallel
Strand 3	A	953	959	parallel
Strand 4	A	1091	1097	anti-parallel
Strand 5	A	1079	1083	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1150	1153	first strand
Strand 2	A	1137	1141	parallel
Strand 3	A	1170	1174	parallel
Strand 4	A	1232	1235	anti-parallel
Strand 5	A	1221	1223	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1160	1165	first strand
Strand 2	A	1256	1264	parallel
Strand 3	A	1245	1253	anti-parallel
Strand 4	A	1194	1196	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1203	1205	first strand
Strand 2	A	1210	1212	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1274	1279	first strand
Strand 2	A	1307	1315	parallel
Strand 3	A	1423	1429	parallel
Strand 4	A	1403	1408	anti-parallel
Strand 5	A	1339	1345	anti-parallel
Strand 6	A	1353	1354	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1281	1282	first strand
Strand 2	A	1286	1288	anti-parallel
Strand 3	A	1321	1325	parallel
Strand 4	A	1383	1393	anti-parallel
Strand 5	A	1368	1373	anti-parallel
Strand 6	A	1577	1579	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1281	1282	first strand
Strand 2	A	1286	1288	anti-parallel
Strand 3	A	1321	1325	parallel
Strand 4	A	1383	1393	anti-parallel
Strand 5	A	1647	1648	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1298	1299	first strand
Strand 2	A	1418	1419	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1458	1463	first strand
Strand 2	A	1671	1680	parallel
Strand 3	A	1528	1537	anti-parallel
Strand 4	A	1478	1479	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1468	1471	first strand
Strand 2	A	1516	1519	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1487	1489	first strand
Strand 2	A	1492	1494	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	114	118	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	40	anti-parallel
Strand 5	B	44	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	114	118	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	109	110	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	142	152	anti-parallel
Strand 3	B	183	192	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	142	152	anti-parallel
Strand 3	B	183	192	anti-parallel
Strand 4	B	176	177	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	201	207	anti-parallel
Strand 3	B	212	218	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	19	24	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	173	182	anti-parallel
Strand 4	C	159	163	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	145	150	anti-parallel
Strand 3	C	191	197	anti-parallel
Strand 4	C	205	210	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	22	25	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	112	115	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	59	60	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	112	115	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	105	108	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	81	84	anti-parallel
Strand 3	D	68	70	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	129	first strand
Strand 2	D	141	150	anti-parallel
Strand 3	D	181	189	anti-parallel
Strand 4	D	168	170	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	129	first strand
Strand 2	D	141	150	anti-parallel
Strand 3	D	181	189	anti-parallel
Strand 4	D	174	175	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	159	first strand
Strand 2	D	199	205	anti-parallel
Strand 3	D	210	216	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	29	anti-parallel
Strand 3	E	62	75	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	48	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	129	137	anti-parallel
Strand 3	E	175	182	anti-parallel
Strand 4	E	159	163	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	155	first strand
Strand 2	E	145	150	anti-parallel
Strand 3	E	191	197	anti-parallel
Strand 4	E	205	210	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	56	59	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	154	first strand
Strand 2	H	194	200	anti-parallel
Strand 3	H	205	211	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	75	anti-parallel
Strand 4	L	62	65	anti-parallel

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There are 6 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	89	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	42	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N5H

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N5H