Analysis of interatomic Contacts of Structural Units in PDB entry:
9N5I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N5I entry

There are 6 chains in PDB entry 9N5I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 2835	ASP 3122
D	ASP 30	ASP 426
E	ASP 1	LYS 107
F	GLN 1	SER 113
H	GLU 1	SER 113
L	GLU 1	LYS 107

There are 11 helices in PDB entry 9N5I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2911	2915	Right-handed alpha
Helix 2	AA2	A	3051	3055	Right-handed alpha
Helix 3	AA3	D	33	38	Right-handed 310
Helix 4	AA4	D	119	121	Right-handed 310
Helix 5	AA5	D	204	208	Right-handed 310
Helix 6	AA6	D	276	280	Right-handed 310
Helix 7	AA7	D	372	377	Right-handed alpha
Helix 8	AA8	F	83	87	Right-handed 310
Helix 9	AA9	H	28	32	Right-handed 310
Helix 10	AB1	H	61	64	Right-handed 310
Helix 11	AB2	H	83	87	Right-handed 310

There are 24 sheets in PDB entry 9N5I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2836	2838	first strand
Strand 2	A	2843	2847	anti-parallel
Strand 3	A	2874	2880	parallel
Strand 4	A	2930	2936	anti-parallel
Strand 5	A	2919	2925	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2862	2869	first strand
Strand 2	A	2969	2976	parallel
Strand 3	A	2945	2952	anti-parallel
Strand 4	A	2891	2893	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2900	2904	first strand
Strand 2	A	2907	2910	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2957	2960	first strand
Strand 2	A	2963	2966	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2986	2987	first strand
Strand 2	A	3019	3025	parallel
Strand 3	A	3070	3077	anti-parallel
Strand 4	A	3058	3063	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3009	3014	first strand
Strand 2	A	3096	3103	parallel
Strand 3	A	3084	3091	anti-parallel
Strand 4	A	3029	3031	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3009	3014	first strand
Strand 2	A	3096	3103	parallel
Strand 3	A	3084	3091	anti-parallel
Strand 4	A	3038	3041	anti-parallel
Strand 5	A	3047	3050	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3117	3119	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	173	179	parallel
Strand 4	D	152	159	anti-parallel
Strand 5	D	96	98	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	80	87	parallel
Strand 3	D	137	144	anti-parallel
Strand 4	D	127	131	anti-parallel
Strand 5	H	97	100	anti-parallel
Strand 6	H	100	100	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	107	first strand
Strand 2	D	115	117	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	190	first strand
Strand 2	D	222	226	parallel
Strand 3	D	255	259	anti-parallel
Strand 4	D	249	252	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	217	first strand
Strand 2	D	282	288	parallel
Strand 3	D	271	275	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	299	first strand
Strand 2	D	339	344	parallel
Strand 3	D	391	397	anti-parallel
Strand 4	D	382	388	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	349	first strand
Strand 2	D	406	414	anti-parallel
Strand 3	D	417	425	anti-parallel
Strand 4	D	324	331	parallel
Strand 5	F	100	100	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	356	first strand
Strand 2	D	370	371	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	66	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	103	106	parallel
Strand 3	E	84	90	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	45	48	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	103	106	parallel
Strand 3	E	84	90	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	77	81	anti-parallel
Strand 4	F	68	72	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	51	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	88	95	anti-parallel
Strand 4	F	107	109	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	94	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N5I

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N5I