Analysis of interatomic Contacts of Structural Units in PDB entry:
9N5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N5J entry

There are 2 chains in PDB entry 9N5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 22LEU 910
C
 GLU 22LEU 910
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 9N5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 33Right-handed alpha
Helix 2
AA2
A
34 42Right-handed alpha
Helix 3
AA3
A
50 61Right-handed alpha
Helix 4
AA4
A
73 82Right-handed alpha
Helix 5
AA5
A
84 102Right-handed alpha
Helix 6
AA6
A
112 119Right-handed alpha
Helix 7
AA7
A
120 134Right-handed alpha
Helix 8
AA8
A
166 168Right-handed 310
Helix 9
AA9
A
247 250Right-handed 310
Helix 10
AB1
A
251 256Right-handed alpha
Helix 11
AB2
A
257 260Right-handed 310
Helix 12
AB3
A
267 299Right-handed alpha
Helix 13
AB4
A
301 317Right-handed alpha
Helix 14
AB5
A
320 338Right-handed alpha
Helix 15
AB6
A
347 354Right-handed alpha
Helix 16
AB7
A
385 397Right-handed alpha
Helix 17
AB8
A
403 416Right-handed alpha
Helix 18
AB9
A
454 458Right-handed 310
Helix 19
AC1
A
467 473Right-handed alpha
Helix 20
AC2
A
488 505Right-handed alpha
Helix 21
AC3
A
547 558Right-handed alpha
Helix 22
AC4
A
569 581Right-handed alpha
Helix 23
AC5
A
590 596Right-handed alpha
Helix 24
AC6
A
600 608Right-handed alpha
Helix 25
AC7
A
615 629Right-handed alpha
Helix 26
AC8
A
640 648Right-handed alpha
Helix 27
AC9
A
659 666Right-handed alpha
Helix 28
AD1
A
676 714Right-handed alpha
Helix 29
AD2
A
723 739Right-handed alpha
Helix 30
AD3
A
740 744Right-handed 310
Helix 31
AD4
A
747 751Right-handed 310
Helix 32
AD5
A
758 787Right-handed alpha
Helix 33
AD6
A
788 792Right-handed 310
Helix 34
AD7
A
795 799Right-handed 310
Helix 35
AD8
A
803 828Right-handed alpha
Helix 36
AD9
A
828 833Right-handed alpha
Helix 37
AE1
A
845 862Right-handed alpha
Helix 38
AE2
A
865 871Right-handed alpha
Helix 39
AE3
A
877 879Right-handed 310
Helix 40
AE4
A
880 907Right-handed alpha
Helix 41
AE5
C
25 33Right-handed alpha
Helix 42
AE6
C
34 42Right-handed alpha
Helix 43
AE7
C
51 61Right-handed alpha
Helix 44
AE8
C
75 82Right-handed alpha
Helix 45
AE9
C
84 102Right-handed alpha
Helix 46
AF1
C
112 134Right-handed alpha
Helix 47
AF2
C
164 168Right-handed 310
Helix 48
AF3
C
198 203Right-handed alpha
Helix 49
AF4
C
221 225Right-handed 310
Helix 50
AF5
C
251 256Right-handed alpha
Helix 51
AF6
C
269 297Right-handed alpha
Helix 52
AF7
C
301 317Right-handed alpha
Helix 53
AF8
C
320 338Right-handed alpha
Helix 54
AF9
C
347 354Right-handed alpha
Helix 55
AG1
C
385 397Right-handed alpha
Helix 56
AG2
C
403 417Right-handed alpha
Helix 57
AG3
C
420 424Right-handed 310
Helix 58
AG4
C
468 473Right-handed alpha
Helix 59
AG5
C
488 505Right-handed alpha
Helix 60
AG6
C
520 524Right-handed 310
Helix 61
AG7
C
525 530Right-handed 310
Helix 62
AG8
C
547 558Right-handed alpha
Helix 63
AG9
C
569 581Right-handed alpha
Helix 64
AH1
C
590 595Right-handed alpha
Helix 65
AH2
C
597 606Right-handed alpha
Helix 66
AH3
C
615 629Right-handed alpha
Helix 67
AH4
C
641 648Right-handed alpha
Helix 68
AH5
C
659 665Right-handed alpha
Helix 69
AH6
C
676 714Right-handed alpha
Helix 70
AH7
C
723 739Right-handed alpha
Helix 71
AH8
C
740 744Right-handed 310
Helix 72
AH9
C
747 751Right-handed 310
Helix 73
AI1
C
758 770Right-handed alpha
Helix 74
AI2
C
770 787Right-handed alpha
Helix 75
AI3
C
795 799Right-handed 310
Helix 76
AI4
C
803 828Right-handed alpha
Helix 77
AI5
C
828 833Right-handed alpha
Helix 78
AI6
C
845 862Right-handed alpha
Helix 79
AI7
C
865 872Right-handed alpha
Helix 80
AI8
C
880 907Right-handed alpha
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There are 12 sheets in PDB entry 9N5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
150 154anti-parallel
Strand 3
A
173 176anti-parallel
Strand 4
A
234 244anti-parallel
Strand 5
A
186 197anti-parallel
Strand 6
A
208 210anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
150 154anti-parallel
Strand 3
A
173 176anti-parallel
Strand 4
A
234 244anti-parallel
Strand 5
A
186 197anti-parallel
Strand 6
A
228 229anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
668 670anti-parallel
Strand 3
A
651 654parallel
Strand 4
A
633 637parallel
Strand 5
A
357 360parallel
Strand 6
A
561 565parallel
Strand 7
A
610 612parallel
Strand 8
A
587 589parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 378first strand
Strand 2
A
532 541anti-parallel
Strand 3
A
508 514anti-parallel
Strand 4
A
460 466anti-parallel
Strand 5
A
444 451anti-parallel
Strand 6
A
430 436anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 378first strand
Strand 2
A
532 541anti-parallel
Strand 3
A
475 478parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 153first strand
Strand 2
C
161 163anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 176first strand
Strand 2
C
240 243anti-parallel
Strand 3
C
190 191anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 210first strand
Strand 2
C
194 197anti-parallel
Strand 3
C
234 237anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
341 343first strand
Strand 2
C
668 670anti-parallel
Strand 3
C
651 654parallel
Strand 4
C
633 637parallel
Strand 5
C
357 360parallel
Strand 6
C
561 565parallel
Strand 7
C
610 612parallel
Strand 8
C
587 589parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
372 375first strand
Strand 2
C
537 541anti-parallel
Strand 3
C
509 513anti-parallel
Strand 4
C
464 466anti-parallel
Strand 5
C
444 450anti-parallel
Strand 6
C
431 435anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
460 461first strand
Strand 2
C
516 517anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
477 478first strand
Strand 2
C
533 534parallel
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