Analysis of interatomic Contacts of Structural Units in PDB entry:
9N5K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N5K entry

There are 2 chains in PDB entry 9N5K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2044	ILE 3118
D	ASP 30	TYR 430

There are 27 helices in PDB entry 9N5K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2061	2065	Right-handed 310
Helix 2	AA2	A	2102	2106	Right-handed 310
Helix 3	AA3	A	2135	2139	Right-handed alpha
Helix 4	AA4	A	2152	2155	Right-handed 310
Helix 5	AA5	A	2300	2304	Right-handed 310
Helix 6	AA6	A	2312	2317	Right-handed alpha
Helix 7	AA7	A	2330	2334	Right-handed 310
Helix 8	AA8	A	2381	2383	Right-handed 310
Helix 9	AA9	A	2404	2409	Right-handed alpha
Helix 10	AB1	A	2409	2427	Right-handed alpha
Helix 11	AB2	A	2442	2446	Right-handed 310
Helix 12	AB3	A	2457	2461	Right-handed 310
Helix 13	AB4	A	2535	2542	Right-handed alpha
Helix 14	AB5	A	2543	2545	Right-handed 310
Helix 15	AB6	A	2586	2591	Right-handed alpha
Helix 16	AB7	A	2647	2649	Right-handed 310
Helix 17	AB8	A	2671	2684	Right-handed alpha
Helix 18	AB9	A	2815	2826	Right-handed alpha
Helix 19	AC1	A	2910	2915	Right-handed alpha
Helix 20	AC2	A	3051	3055	Right-handed alpha
Helix 21	AC3	D	33	40	Right-handed 310
Helix 22	AC4	D	119	122	Right-handed 310
Helix 23	AC5	D	204	210	Right-handed 310
Helix 24	AC6	D	240	244	Right-handed 310
Helix 25	AC7	D	276	280	Right-handed 310
Helix 26	AC8	D	365	367	Right-handed 310
Helix 27	AC9	D	371	376	Right-handed alpha

There are 28 sheets in PDB entry 9N5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2054	2057	first strand
Strand 2	A	2083	2088	parallel
Strand 3	A	2158	2163	anti-parallel
Strand 4	A	2143	2150	anti-parallel
Strand 5	A	2515	2518	anti-parallel
Strand 6	A	2521	2524	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2073	2076	first strand
Strand 2	A	2186	2194	parallel
Strand 3	A	2173	2174	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2073	2076	first strand
Strand 2	A	2186	2194	parallel
Strand 3	A	2177	2180	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2124	2126	first strand
Strand 2	A	2132	2134	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2205	2209	first strand
Strand 2	A	2238	2242	parallel
Strand 3	A	2337	2341	anti-parallel
Strand 4	A	2320	2321	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2226	2227	first strand
Strand 2	A	2364	2371	parallel
Strand 3	A	2349	2357	anti-parallel
Strand 4	A	2248	2250	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2230	2233	first strand
Strand 2	A	2364	2371	parallel
Strand 3	A	2349	2357	anti-parallel
Strand 4	A	2262	2264	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2385	2390	first strand
Strand 2	A	2471	2478	parallel
Strand 3	A	2651	2658	parallel
Strand 4	A	2634	2641	anti-parallel
Strand 5	A	2568	2569	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2393	2395	first strand
Strand 2	A	2449	2453	anti-parallel
Strand 3	A	2485	2489	parallel
Strand 4	A	2621	2623	anti-parallel
Strand 5	A	2595	2597	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2705	2709	first strand
Strand 2	A	2808	2813	parallel
Strand 3	A	2798	2804	anti-parallel
Strand 4	A	2735	2738	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2830	2833	first strand
Strand 2	A	2862	2868	parallel
Strand 3	A	2969	2975	parallel
Strand 4	A	2946	2952	anti-parallel
Strand 5	A	2891	2893	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2836	2838	first strand
Strand 2	A	2843	2845	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2876	2880	first strand
Strand 2	A	2930	2934	anti-parallel
Strand 3	A	2921	2924	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2902	2904	first strand
Strand 2	A	2907	2908	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2957	2960	first strand
Strand 2	A	2963	2966	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2996	2999	first strand
Strand 2	A	2983	2987	parallel
Strand 3	A	3019	3025	parallel
Strand 4	A	3070	3077	anti-parallel
Strand 5	A	3058	3063	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3009	3014	first strand
Strand 2	A	3096	3103	parallel
Strand 3	A	3085	3091	anti-parallel
Strand 4	A	3029	3030	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3038	3039	first strand
Strand 2	A	3049	3050	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	230	231	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	50	first strand
Strand 2	D	80	87	parallel
Strand 3	D	137	144	anti-parallel
Strand 4	D	127	131	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	70	first strand
Strand 2	D	172	179	parallel
Strand 3	D	73	75	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	70	first strand
Strand 2	D	172	179	parallel
Strand 3	D	152	159	anti-parallel
Strand 4	D	96	98	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	109	first strand
Strand 2	D	114	117	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	191	first strand
Strand 2	D	222	227	parallel
Strand 3	D	255	259	anti-parallel
Strand 4	D	250	252	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	217	first strand
Strand 2	D	282	288	parallel
Strand 3	D	271	275	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	313	first strand
Strand 2	D	295	299	parallel
Strand 3	D	339	345	parallel
Strand 4	D	391	397	anti-parallel
Strand 5	D	382	388	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	331	first strand
Strand 2	D	417	425	parallel
Strand 3	D	406	414	anti-parallel
Strand 4	D	347	349	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	357	first strand
Strand 2	D	369	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N5K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N5K