Analysis of interatomic Contacts of Structural Units in PDB entry:
9N5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N5U entry

There are 3 chains in PDB entry 9N5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 10	ASN 962
B	GLU 3	LYS 598
C	ILE 3	LEU 152

There are 77 helices in PDB entry 9N5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	35	Right-handed alpha
Helix 2	AA2	A	81	97	Right-handed alpha
Helix 3	AA3	A	105	111	Right-handed alpha
Helix 4	AA4	A	116	127	Right-handed alpha
Helix 5	AA5	A	128	137	Right-handed alpha
Helix 6	AA6	A	142	150	Right-handed alpha
Helix 7	AA7	A	152	158	Right-handed alpha
Helix 8	AA8	A	159	163	Right-handed 310
Helix 9	AA9	A	168	183	Right-handed alpha
Helix 10	AB1	A	204	216	Right-handed alpha
Helix 11	AB2	A	232	237	Right-handed alpha
Helix 12	AB3	A	244	257	Right-handed alpha
Helix 13	AB4	A	273	281	Right-handed alpha
Helix 14	AB5	A	309	319	Right-handed alpha
Helix 15	AB6	A	334	348	Right-handed alpha
Helix 16	AB7	A	365	376	Right-handed alpha
Helix 17	AB8	A	439	447	Right-handed alpha
Helix 18	AB9	A	473	478	Right-handed alpha
Helix 19	AC1	A	481	500	Right-handed alpha
Helix 20	AC2	A	503	513	Right-handed alpha
Helix 21	AC3	A	514	516	Right-handed 310
Helix 22	AC4	A	517	524	Right-handed alpha
Helix 23	AC5	A	524	535	Right-handed alpha
Helix 24	AC6	A	544	549	Right-handed 310
Helix 25	AC7	A	563	568	Right-handed alpha
Helix 26	AC8	A	579	588	Right-handed alpha
Helix 27	AC9	A	601	610	Right-handed alpha
Helix 28	AD1	A	637	640	Right-handed 310
Helix 29	AD2	A	644	653	Right-handed alpha
Helix 30	AD3	A	664	668	Right-handed 310
Helix 31	AD4	A	677	681	Right-handed 310
Helix 32	AD5	A	687	693	Right-handed alpha
Helix 33	AD6	A	752	759	Right-handed alpha
Helix 34	AD7	A	760	763	Right-handed 310
Helix 35	AD8	A	776	787	Right-handed alpha
Helix 36	AD9	A	798	813	Right-handed alpha
Helix 37	AE1	A	828	835	Right-handed alpha
Helix 38	AE2	A	848	854	Right-handed alpha
Helix 39	AE3	A	888	896	Right-handed alpha
Helix 40	AE4	A	956	962	Right-handed alpha
Helix 41	AE5	B	12	19	Right-handed alpha
Helix 42	AE6	B	19	34	Right-handed alpha
Helix 43	AE7	B	48	52	Right-handed 310
Helix 44	AE8	B	70	72	Right-handed 310
Helix 45	AE9	B	73	82	Right-handed alpha
Helix 46	AF1	B	130	137	Right-handed alpha
Helix 47	AF2	B	140	149	Right-handed alpha
Helix 48	AF3	B	150	161	Right-handed alpha
Helix 49	AF4	B	172	183	Right-handed alpha
Helix 50	AF5	B	202	211	Right-handed alpha
Helix 51	AF6	B	211	227	Right-handed alpha
Helix 52	AF7	B	239	256	Right-handed alpha
Helix 53	AF8	B	262	266	Right-handed 310
Helix 54	AF9	B	280	284	Right-handed 310
Helix 55	AG1	B	285	294	Right-handed alpha
Helix 56	AG2	B	311	315	Right-handed 310
Helix 57	AG3	B	322	335	Right-handed alpha
Helix 58	AG4	B	335	341	Right-handed alpha
Helix 59	AG5	B	372	379	Right-handed alpha
Helix 60	AG6	B	406	408	Right-handed 310
Helix 61	AG7	B	413	421	Right-handed alpha
Helix 62	AG8	B	437	453	Right-handed alpha
Helix 63	AG9	B	457	476	Right-handed alpha
Helix 64	AH1	B	480	498	Right-handed alpha
Helix 65	AH2	B	500	505	Right-handed alpha
Helix 66	AH3	B	507	517	Right-handed alpha
Helix 67	AH4	B	517	526	Right-handed alpha
Helix 68	AH5	B	551	555	Right-handed 310
Helix 69	AH6	B	582	587	Right-handed alpha
Helix 70	AH7	C	3	11	Right-handed 310
Helix 71	AH8	C	14	16	Right-handed 310
Helix 72	AH9	C	17	30	Right-handed alpha
Helix 73	AI1	C	33	45	Right-handed alpha
Helix 74	AI2	C	47	58	Right-handed alpha
Helix 75	AI3	C	76	82	Right-handed alpha
Helix 76	AI4	C	83	96	Right-handed alpha
Helix 77	AI5	C	136	149	Right-handed alpha

There are 19 sheets in PDB entry 9N5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	11	14	anti-parallel
Strand 3	A	76	77	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	63	65	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	264	first strand
Strand 2	A	220	225	parallel
Strand 3	A	197	201	parallel
Strand 4	A	283	286	parallel
Strand 5	A	469	471	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	436	437	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	429	432	parallel
Strand 3	A	327	331	parallel
Strand 4	A	350	355	parallel
Strand 5	A	378	381	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	389	first strand
Strand 2	A	396	404	anti-parallel
Strand 3	A	415	417	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	389	first strand
Strand 2	A	396	404	anti-parallel
Strand 3	A	423	426	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	451	first strand
Strand 2	A	454	455	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	635	first strand
Strand 2	A	698	700	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	662	first strand
Strand 2	A	669	671	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	718	first strand
Strand 2	A	727	732	anti-parallel
Strand 3	A	737	742	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	773	774	first strand
Strand 2	A	769	770	anti-parallel
Strand 3	A	921	925	anti-parallel
Strand 4	A	905	909	parallel
Strand 5	A	790	793	parallel
Strand 6	A	816	818	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	858	859	first strand
Strand 2	A	837	841	parallel
Strand 3	A	866	870	parallel
Strand 4	A	880	883	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	938	first strand
Strand 2	A	944	947	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	4	10	parallel
Strand 3	B	55	59	anti-parallel
Strand 4	B	62	66	anti-parallel
Strand 5	B	92	99	anti-parallel
Strand 6	B	102	107	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	277	first strand
Strand 2	B	230	236	parallel
Strand 3	B	189	194	parallel
Strand 4	B	317	321	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	368	first strand
Strand 2	B	350	357	anti-parallel
Strand 3	B	428	433	parallel
Strand 4	B	390	395	anti-parallel
Strand 5	B	401	404	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	542	first strand
Strand 2	B	592	596	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	113	first strand
Strand 2	C	69	74	parallel
Strand 3	C	124	127	anti-parallel
Strand 4	C	131	133	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N5U