Analysis of interatomic Contacts of Structural Units in PDB entry:
9N5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N5V entry

There are 3 chains in PDB entry 9N5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 10	LEU 960
B	SER 2	ALA 597
C	ILE 3	LEU 66

There are 70 helices in PDB entry 9N5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	35	Right-handed alpha
Helix 2	AA2	A	81	99	Right-handed alpha
Helix 3	AA3	A	105	111	Right-handed alpha
Helix 4	AA4	A	116	127	Right-handed alpha
Helix 5	AA5	A	128	138	Right-handed alpha
Helix 6	AA6	A	142	150	Right-handed alpha
Helix 7	AA7	A	168	183	Right-handed alpha
Helix 8	AA8	A	204	216	Right-handed alpha
Helix 9	AA9	A	231	235	Right-handed 310
Helix 10	AB1	A	244	257	Right-handed alpha
Helix 11	AB2	A	273	280	Right-handed alpha
Helix 12	AB3	A	309	319	Right-handed alpha
Helix 13	AB4	A	334	347	Right-handed alpha
Helix 14	AB5	A	365	376	Right-handed alpha
Helix 15	AB6	A	439	446	Right-handed alpha
Helix 16	AB7	A	473	478	Right-handed alpha
Helix 17	AB8	A	481	501	Right-handed alpha
Helix 18	AB9	A	503	513	Right-handed alpha
Helix 19	AC1	A	514	516	Right-handed 310
Helix 20	AC2	A	517	524	Right-handed alpha
Helix 21	AC3	A	524	535	Right-handed alpha
Helix 22	AC4	A	544	549	Right-handed 310
Helix 23	AC5	A	563	568	Right-handed alpha
Helix 24	AC6	A	579	588	Right-handed alpha
Helix 25	AC7	A	601	610	Right-handed alpha
Helix 26	AC8	A	637	640	Right-handed 310
Helix 27	AC9	A	644	653	Right-handed alpha
Helix 28	AD1	A	664	668	Right-handed 310
Helix 29	AD2	A	677	681	Right-handed 310
Helix 30	AD3	A	688	693	Right-handed alpha
Helix 31	AD4	A	752	758	Right-handed alpha
Helix 32	AD5	A	759	763	Right-handed 310
Helix 33	AD6	A	776	787	Right-handed alpha
Helix 34	AD7	A	798	813	Right-handed alpha
Helix 35	AD8	A	828	835	Right-handed alpha
Helix 36	AD9	A	848	854	Right-handed alpha
Helix 37	AE1	A	888	893	Right-handed 310
Helix 38	AE2	A	912	918	Right-handed 310
Helix 39	AE3	A	929	933	Right-handed 310
Helix 40	AE4	B	12	19	Right-handed alpha
Helix 41	AE5	B	19	34	Right-handed alpha
Helix 42	AE6	B	48	52	Right-handed 310
Helix 43	AE7	B	73	82	Right-handed alpha
Helix 44	AE8	B	130	137	Right-handed alpha
Helix 45	AE9	B	140	148	Right-handed alpha
Helix 46	AF1	B	150	161	Right-handed alpha
Helix 47	AF2	B	172	183	Right-handed alpha
Helix 48	AF3	B	202	211	Right-handed alpha
Helix 49	AF4	B	211	227	Right-handed alpha
Helix 50	AF5	B	239	256	Right-handed alpha
Helix 51	AF6	B	262	266	Right-handed 310
Helix 52	AF7	B	285	294	Right-handed alpha
Helix 53	AF8	B	311	315	Right-handed 310
Helix 54	AF9	B	322	341	Right-handed alpha
Helix 55	AG1	B	373	379	Right-handed alpha
Helix 56	AG2	B	397	400	Right-handed 310
Helix 57	AG3	B	406	408	Right-handed 310
Helix 58	AG4	B	413	421	Right-handed alpha
Helix 59	AG5	B	437	453	Right-handed alpha
Helix 60	AG6	B	457	476	Right-handed alpha
Helix 61	AG7	B	480	498	Right-handed alpha
Helix 62	AG8	B	500	505	Right-handed alpha
Helix 63	AG9	B	507	517	Right-handed alpha
Helix 64	AH1	B	517	526	Right-handed alpha
Helix 65	AH2	B	552	557	Right-handed alpha
Helix 66	AH3	C	3	11	Right-handed 310
Helix 67	AH4	C	14	16	Right-handed 310
Helix 68	AH5	C	17	30	Right-handed alpha
Helix 69	AH6	C	33	45	Right-handed alpha
Helix 70	AH7	C	47	58	Right-handed alpha

There are 18 sheets in PDB entry 9N5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	11	14	anti-parallel
Strand 3	A	76	77	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	62	65	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	264	first strand
Strand 2	A	220	225	parallel
Strand 3	A	197	201	parallel
Strand 4	A	283	286	parallel
Strand 5	A	469	471	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	429	432	parallel
Strand 3	A	327	331	parallel
Strand 4	A	350	355	parallel
Strand 5	A	378	381	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	389	first strand
Strand 2	A	396	403	anti-parallel
Strand 3	A	416	417	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	389	first strand
Strand 2	A	396	403	anti-parallel
Strand 3	A	423	426	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	451	first strand
Strand 2	A	454	455	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	635	first strand
Strand 2	A	698	700	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	662	first strand
Strand 2	A	669	671	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	718	first strand
Strand 2	A	727	733	anti-parallel
Strand 3	A	736	741	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	773	774	first strand
Strand 2	A	769	770	anti-parallel
Strand 3	A	922	925	anti-parallel
Strand 4	A	906	909	parallel
Strand 5	A	790	793	parallel
Strand 6	A	816	818	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	858	859	first strand
Strand 2	A	837	840	parallel
Strand 3	A	866	870	parallel
Strand 4	A	880	883	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	938	first strand
Strand 2	A	944	947	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	6	10	parallel
Strand 3	B	54	58	anti-parallel
Strand 4	B	62	67	anti-parallel
Strand 5	B	92	99	anti-parallel
Strand 6	B	102	107	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	277	first strand
Strand 2	B	230	236	parallel
Strand 3	B	189	194	parallel
Strand 4	B	317	321	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	368	first strand
Strand 2	B	350	357	anti-parallel
Strand 3	B	428	433	parallel
Strand 4	B	390	395	anti-parallel
Strand 5	B	401	404	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	372	first strand
Strand 2	B	411	412	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	542	first strand
Strand 2	B	592	593	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N5V