Analysis of interatomic Contacts of Structural Units in PDB entry:
9N61


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N61 entry

There are 3 chains in PDB entry 9N61 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 173ALA 742
B
 GLN 131GLN 681
C
 ARG 1LEU 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 9N61. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
183 202Right-handed alpha
Helix 2
AA2
A
202 210Right-handed alpha
Helix 3
AA3
A
210 218Right-handed alpha
Helix 4
AA4
A
220 270Right-handed alpha
Helix 5
AA5
A
274 279Right-handed alpha
Helix 6
AA6
A
280 324Right-handed alpha
Helix 7
AA7
A
324 339Right-handed alpha
Helix 8
AA8
A
340 372Right-handed alpha
Helix 9
AA9
A
373 379Right-handed alpha
Helix 10
AB1
A
382 435Right-handed alpha
Helix 11
AB2
A
440 474Right-handed alpha
Helix 12
AB3
A
475 484Right-handed alpha
Helix 13
AB4
A
545 552Right-handed alpha
Helix 14
AB5
A
573 580Right-handed alpha
Helix 15
AB6
A
594 600Right-handed alpha
Helix 16
AB7
A
608 620Right-handed alpha
Helix 17
AB8
A
621 626Right-handed alpha
Helix 18
AB9
A
630 634Right-handed 310
Helix 19
AC1
A
637 641Right-handed 310
Helix 20
AC2
A
644 656Right-handed alpha
Helix 21
AC3
A
675 687Right-handed alpha
Helix 22
AC4
A
690 694Right-handed 310
Helix 23
AC5
A
702 707Right-handed alpha
Helix 24
AC6
A
726 731Right-handed alpha
Helix 25
AC7
A
735 742Right-handed alpha
Helix 26
AC8
B
132 145Right-handed alpha
Helix 27
AC9
B
148 168Right-handed alpha
Helix 28
AD1
B
168 180Right-handed alpha
Helix 29
AD2
B
185 234Right-handed alpha
Helix 30
AD3
B
237 244Right-handed alpha
Helix 31
AD4
B
245 255Right-handed alpha
Helix 32
AD5
B
255 261Right-handed alpha
Helix 33
AD6
B
266 289Right-handed alpha
Helix 34
AD7
B
291 338Right-handed alpha
Helix 35
AD8
B
338 345Right-handed alpha
Helix 36
AD9
B
347 400Right-handed alpha
Helix 37
AE1
B
405 439Right-handed alpha
Helix 38
AE2
B
440 448Right-handed alpha
Helix 39
AE3
B
508 516Right-handed alpha
Helix 40
AE4
B
533 537Right-handed 310
Helix 41
AE5
B
538 544Right-handed alpha
Helix 42
AE6
B
559 565Right-handed alpha
Helix 43
AE7
B
572 583Right-handed alpha
Helix 44
AE8
B
601 605Right-handed 310
Helix 45
AE9
B
608 622Right-handed alpha
Helix 46
AF1
B
638 646Right-handed alpha
Helix 47
AF2
B
662 666Right-handed 310
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There are 4 sheets in PDB entry 9N61. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 528first strand
Strand 2
A
503 509anti-parallel
Strand 3
A
559 564anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 584first strand
Strand 2
A
663 667parallel
Strand 3
A
695 699parallel
Strand 4
A
533 537parallel
Strand 5
A
711 716parallel
Strand 6
A
719 720anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 493first strand
Strand 2
B
468 474anti-parallel
Strand 3
B
524 529anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 549first strand
Strand 2
B
627 630parallel
Strand 3
B
655 660parallel
Strand 4
B
498 502parallel
Strand 5
B
671 676parallel
Strand 6
B
679 680anti-parallel
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