Analysis of interatomic Contacts of Structural Units in PDB entry:
9N62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N62 entry

There are 2 chains in PDB entry 9N62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 173ALA 742
B
 GLN 131GLN 681
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9N62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
173 181Right-handed alpha
Helix 2
AA2
A
185 201Right-handed alpha
Helix 3
AA3
A
202 217Right-handed alpha
Helix 4
AA4
A
221 269Right-handed alpha
Helix 5
AA5
A
272 277Right-handed alpha
Helix 6
AA6
A
278 280Right-handed 310
Helix 7
AA7
A
281 286Right-handed alpha
Helix 8
AA8
A
287 324Right-handed alpha
Helix 9
AA9
A
324 340Right-handed alpha
Helix 10
AB1
A
340 372Right-handed alpha
Helix 11
AB2
A
373 379Right-handed alpha
Helix 12
AB3
A
382 437Right-handed alpha
Helix 13
AB4
A
440 475Right-handed alpha
Helix 14
AB5
A
475 483Right-handed alpha
Helix 15
AB6
A
543 552Right-handed alpha
Helix 16
AB7
A
570 572Right-handed 310
Helix 17
AB8
A
573 580Right-handed alpha
Helix 18
AB9
A
594 600Right-handed alpha
Helix 19
AC1
A
608 619Right-handed alpha
Helix 20
AC2
A
621 626Right-handed alpha
Helix 21
AC3
A
630 634Right-handed 310
Helix 22
AC4
A
637 641Right-handed 310
Helix 23
AC5
A
644 658Right-handed alpha
Helix 24
AC6
A
674 687Right-handed alpha
Helix 25
AC7
A
688 694Right-handed 310
Helix 26
AC8
A
702 708Right-handed alpha
Helix 27
AC9
A
725 733Right-handed alpha
Helix 28
AD1
A
734 742Right-handed alpha
Helix 29
AD2
B
132 146Right-handed alpha
Helix 30
AD3
B
148 168Right-handed alpha
Helix 31
AD4
B
168 181Right-handed alpha
Helix 32
AD5
B
185 234Right-handed alpha
Helix 33
AD6
B
237 244Right-handed alpha
Helix 34
AD7
B
245 289Right-handed alpha
Helix 35
AD8
B
289 298Right-handed alpha
Helix 36
AD9
B
299 338Right-handed alpha
Helix 37
AE1
B
338 346Right-handed alpha
Helix 38
AE2
B
347 402Right-handed alpha
Helix 39
AE3
B
405 436Right-handed alpha
Helix 40
AE4
B
437 439Right-handed 310
Helix 41
AE5
B
440 449Right-handed alpha
Helix 42
AE6
B
508 517Right-handed alpha
Helix 43
AE7
B
533 537Right-handed 310
Helix 44
AE8
B
538 543Right-handed alpha
Helix 45
AE9
B
559 565Right-handed alpha
Helix 46
AF1
B
572 583Right-handed alpha
Helix 47
AF2
B
594 598Right-handed 310
Helix 48
AF3
B
601 605Right-handed 310
Helix 49
AF4
B
608 623Right-handed alpha
Helix 50
AF5
B
638 647Right-handed alpha
Helix 51
AF6
B
662 666Right-handed 310
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There are 5 sheets in PDB entry 9N62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 524first strand
Strand 2
A
503 511anti-parallel
Strand 3
A
527 528anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 524first strand
Strand 2
A
503 511anti-parallel
Strand 3
A
559 564anti-parallel
Strand 4
A
567 568anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 584first strand
Strand 2
A
663 667parallel
Strand 3
A
695 699parallel
Strand 4
A
533 537parallel
Strand 5
A
711 716parallel
Strand 6
A
719 724anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 492first strand
Strand 2
B
468 474anti-parallel
Strand 3
B
524 529anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 549first strand
Strand 2
B
627 631parallel
Strand 3
B
655 660parallel
Strand 4
B
498 502parallel
Strand 5
B
671 676parallel
Strand 6
B
679 680anti-parallel
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