Analysis of interatomic Contacts of Structural Units in PDB entry:
9N6B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N6B entry

There are 8 chains in PDB entry 9N6B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 5	HIS 536
B	LYS 4	PHE 537
C	MET -7	PRO 451
D	ASN 6	PRO 451
E	GLN 2	GLY 309
F	MET 1	PRO 227
H	G 9	C 92
I	G 123	G 163

There are111 helices in PDB entry 9N6B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	21	Right-handed alpha
Helix 2	AA2	A	23	29	Right-handed alpha
Helix 3	AA3	A	30	42	Right-handed alpha
Helix 4	AA4	A	80	100	Right-handed alpha
Helix 5	AA5	A	109	113	Right-handed 310
Helix 6	AA6	A	154	171	Right-handed alpha
Helix 7	AA7	A	185	191	Right-handed alpha
Helix 8	AA8	A	210	214	Right-handed 310
Helix 9	AA9	A	218	242	Right-handed alpha
Helix 10	AB1	A	244	267	Right-handed alpha
Helix 11	AB2	A	273	298	Right-handed alpha
Helix 12	AB3	A	302	317	Right-handed alpha
Helix 13	AB4	A	347	349	Right-handed 310
Helix 14	AB5	A	350	371	Right-handed alpha
Helix 15	AB6	A	376	380	Right-handed 310
Helix 16	AB7	A	394	399	Right-handed alpha
Helix 17	AB8	A	400	409	Right-handed alpha
Helix 18	AB9	A	420	425	Right-handed alpha
Helix 19	AC1	A	426	427	Right-handed 310
Helix 20	AC2	A	428	430	Right-handed 310
Helix 21	AC3	A	459	468	Right-handed alpha
Helix 22	AC4	A	476	491	Right-handed alpha
Helix 23	AC5	A	496	511	Right-handed alpha
Helix 24	AC6	A	514	536	Right-handed alpha
Helix 25	AC7	B	6	21	Right-handed alpha
Helix 26	AC8	B	23	29	Right-handed alpha
Helix 27	AC9	B	30	43	Right-handed alpha
Helix 28	AD1	B	79	100	Right-handed alpha
Helix 29	AD2	B	109	113	Right-handed 310
Helix 30	AD3	B	154	171	Right-handed alpha
Helix 31	AD4	B	205	209	Right-handed alpha
Helix 32	AD5	B	221	241	Right-handed alpha
Helix 33	AD6	B	242	262	Right-handed alpha
Helix 34	AD7	B	274	295	Right-handed alpha
Helix 35	AD8	B	302	318	Right-handed alpha
Helix 36	AD9	B	347	349	Right-handed 310
Helix 37	AE1	B	350	371	Right-handed alpha
Helix 38	AE2	B	376	380	Right-handed 310
Helix 39	AE3	B	394	399	Right-handed alpha
Helix 40	AE4	B	400	409	Right-handed alpha
Helix 41	AE5	B	420	425	Right-handed alpha
Helix 42	AE6	B	426	427	Right-handed 310
Helix 43	AE7	B	428	430	Right-handed 310
Helix 44	AE8	B	459	468	Right-handed alpha
Helix 45	AE9	B	476	491	Right-handed alpha
Helix 46	AF1	B	496	510	Right-handed alpha
Helix 47	AF2	B	514	537	Right-handed alpha
Helix 48	AF3	C	6	19	Right-handed alpha
Helix 49	AF4	C	23	30	Right-handed alpha
Helix 50	AF5	C	30	43	Right-handed alpha
Helix 51	AF6	C	79	100	Right-handed alpha
Helix 52	AF7	C	154	171	Right-handed alpha
Helix 53	AF8	C	183	190	Right-handed 310
Helix 54	AF9	C	219	241	Right-handed alpha
Helix 55	AG1	C	242	263	Right-handed alpha
Helix 56	AG2	C	264	267	Right-handed 310
Helix 57	AG3	C	274	294	Right-handed alpha
Helix 58	AG4	C	297	302	Right-handed 310
Helix 59	AG5	C	303	317	Right-handed alpha
Helix 60	AG6	C	347	349	Right-handed 310
Helix 61	AG7	C	350	371	Right-handed alpha
Helix 62	AG8	C	376	380	Right-handed 310
Helix 63	AG9	C	394	399	Right-handed alpha
Helix 64	AH1	C	400	409	Right-handed alpha
Helix 65	AH2	C	420	425	Right-handed alpha
Helix 66	AH3	C	426	427	Right-handed 310
Helix 67	AH4	C	428	430	Right-handed 310
Helix 68	AH5	D	7	20	Right-handed alpha
Helix 69	AH6	D	23	30	Right-handed alpha
Helix 70	AH7	D	30	43	Right-handed alpha
Helix 71	AH8	D	79	100	Right-handed alpha
Helix 72	AH9	D	109	113	Right-handed 310
Helix 73	AI1	D	154	171	Right-handed alpha
Helix 74	AI2	D	183	187	Right-handed 310
Helix 75	AI3	D	222	240	Right-handed alpha
Helix 76	AI4	D	246	264	Right-handed alpha
Helix 77	AI5	D	276	291	Right-handed alpha
Helix 78	AI6	D	291	296	Right-handed alpha
Helix 79	AI7	D	302	318	Right-handed alpha
Helix 80	AI8	D	350	371	Right-handed alpha
Helix 81	AI9	D	394	399	Right-handed alpha
Helix 82	AJ1	D	400	409	Right-handed alpha
Helix 83	AJ2	D	420	425	Right-handed alpha
Helix 84	AJ3	E	3	12	Right-handed alpha
Helix 85	AJ4	E	14	25	Right-handed alpha
Helix 86	AJ5	E	48	63	Right-handed alpha
Helix 87	AJ6	E	64	66	Right-handed 310
Helix 88	AJ7	E	80	86	Right-handed alpha
Helix 89	AJ8	E	102	106	Right-handed 310
Helix 90	AJ9	E	107	118	Right-handed alpha
Helix 91	AK1	E	123	134	Right-handed alpha
Helix 92	AK2	E	154	163	Right-handed alpha
Helix 93	AK3	E	163	176	Right-handed alpha
Helix 94	AK4	E	200	213	Right-handed alpha
Helix 95	AK5	E	248	264	Right-handed alpha
Helix 96	AK6	E	268	287	Right-handed alpha
Helix 97	AK7	E	288	298	Right-handed alpha
Helix 98	AK8	E	298	308	Right-handed alpha
Helix 99	AK9	F	12	17	Right-handed alpha
Helix 100	AL1	F	23	27	Right-handed 310
Helix 101	AL2	F	28	44	Right-handed alpha
Helix 102	AL3	F	78	82	Right-handed 310
Helix 103	AL4	F	84	86	Right-handed 310
Helix 104	AL5	F	98	103	Right-handed alpha
Helix 105	AL6	F	108	112	Right-handed 310
Helix 106	AL7	F	119	122	Right-handed 310
Helix 107	AL8	F	139	154	Right-handed alpha
Helix 108	AL9	F	161	173	Right-handed alpha
Helix 109	AM1	F	173	189	Right-handed alpha
Helix 110	AM2	F	193	209	Right-handed alpha
Helix 111	AM3	F	214	226	Right-handed alpha

There are 18 sheets in PDB entry 9N6B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	64	first strand
Strand 2	A	45	55	anti-parallel
Strand 3	A	121	130	anti-parallel
Strand 4	A	133	142	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	182	first strand
Strand 2	A	382	386	parallel
Strand 3	A	412	417	parallel
Strand 4	A	69	73	parallel
Strand 5	A	432	436	parallel
Strand 6	A	447	449	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	329	first strand
Strand 2	A	332	339	anti-parallel
Strand 3	A	342	345	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	440	first strand
Strand 2	A	443	444	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	64	first strand
Strand 2	B	45	55	anti-parallel
Strand 3	B	121	130	anti-parallel
Strand 4	B	133	142	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	178	182	parallel
Strand 3	B	382	387	parallel
Strand 4	B	413	417	parallel
Strand 5	B	69	73	parallel
Strand 6	B	432	440	parallel
Strand 7	B	443	449	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	328	first strand
Strand 2	B	333	339	anti-parallel
Strand 3	B	342	345	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	64	first strand
Strand 2	C	47	55	anti-parallel
Strand 3	C	121	130	anti-parallel
Strand 4	C	133	142	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	182	first strand
Strand 2	C	382	387	parallel
Strand 3	C	413	418	parallel
Strand 4	C	69	73	parallel
Strand 5	C	432	440	parallel
Strand 6	C	443	449	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	333	339	anti-parallel
Strand 3	C	342	345	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	64	first strand
Strand 2	D	45	55	anti-parallel
Strand 3	D	121	130	anti-parallel
Strand 4	D	133	142	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	182	first strand
Strand 2	D	382	386	parallel
Strand 3	D	413	418	parallel
Strand 4	D	69	73	parallel
Strand 5	D	432	440	parallel
Strand 6	D	443	449	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	329	first strand
Strand 2	D	332	339	anti-parallel
Strand 3	D	342	344	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	35	first strand
Strand 2	E	41	47	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	180	184	first strand
Strand 2	E	187	192	anti-parallel
Strand 3	E	93	98	anti-parallel
Strand 4	E	224	226	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	233	234	first strand
Strand 2	E	237	239	anti-parallel
Strand 3	E	245	246	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	71	first strand
Strand 2	F	88	92	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	126	first strand
Strand 2	F	132	134	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N6B

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N6B