Analysis of interatomic Contacts of Structural Units in PDB entry:
9N6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N6D entry

There are 2 chains in PDB entry 9N6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 13ASN 406
B
 GLN 13ASN 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 9N6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
34 47Right-handed alpha
Helix 3
AA3
A
49 65Right-handed alpha
Helix 4
AA4
A
80 90Right-handed alpha
Helix 5
AA5
A
100 105Right-handed alpha
Helix 6
AA6
A
135 143Right-handed alpha
Helix 7
AA7
A
144 148Right-handed 310
Helix 8
AA8
A
160 173Right-handed alpha
Helix 9
AA9
A
183 195Right-handed alpha
Helix 10
AB1
A
200 219Right-handed alpha
Helix 11
AB2
A
238 249Right-handed alpha
Helix 12
AB3
A
251 262Right-handed alpha
Helix 13
AB4
A
266 288Right-handed alpha
Helix 14
AB5
A
289 290Right-handed 310
Helix 15
AB6
A
291 295Right-handed 310
Helix 16
AB7
A
297 313Right-handed alpha
Helix 17
AB8
A
316 327Right-handed alpha
Helix 18
AB9
A
332 337Right-handed alpha
Helix 19
AC1
A
338 339Right-handed 310
Helix 20
AC2
A
340 344Right-handed 310
Helix 21
AC3
A
352 368Right-handed alpha
Helix 22
AC4
A
375 406Right-handed alpha
Helix 23
AC5
B
14 27Right-handed alpha
Helix 24
AC6
B
34 48Right-handed alpha
Helix 25
AC7
B
49 66Right-handed alpha
Helix 26
AC8
B
80 90Right-handed alpha
Helix 27
AC9
B
130 134Right-handed 310
Helix 28
AD1
B
135 143Right-handed alpha
Helix 29
AD2
B
144 148Right-handed 310
Helix 30
AD3
B
160 173Right-handed alpha
Helix 31
AD4
B
183 195Right-handed alpha
Helix 32
AD5
B
200 219Right-handed alpha
Helix 33
AD6
B
238 249Right-handed alpha
Helix 34
AD7
B
251 262Right-handed alpha
Helix 35
AD8
B
266 289Right-handed alpha
Helix 36
AD9
B
290 295Right-handed 310
Helix 37
AE1
B
297 313Right-handed alpha
Helix 38
AE2
B
316 327Right-handed alpha
Helix 39
AE3
B
332 337Right-handed alpha
Helix 40
AE4
B
338 339Right-handed 310
Helix 41
AE5
B
340 344Right-handed 310
Helix 42
AE6
B
352 368Right-handed alpha
Helix 43
AE7
B
375 406Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9N6D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
121 126anti-parallel
Strand 3
A
69 75parallel
Strand 4
A
150 155parallel
Strand 5
A
178 181parallel
Strand 6
A
226 228parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
121 126anti-parallel
Strand 3
B
69 74parallel
Strand 4
B
152 155parallel
Strand 5
B
178 181parallel
Strand 6
B
226 228parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il