Analysis of interatomic Contacts of Structural Units in PDB entry:
9N6K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N6K entry

There are 12 chains in PDB entry 9N6K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 15	GLY 102
C	THR 10	LYS 119
D	THR 29	LYS 122
F	ALA 15	GLY 102
G	THR 10	LYS 118
H	ARG 30	ALA 121
E	HIS 39	ALA 135
A	HIS 39	ALA 135
L	LYS 122	TYR 956
K	LYS 122	ARG 1265
I	C -91	C 70
J	G -70	G 91

There are107 helices in PDB entry 9N6K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	24	29	Right-handed 310
Helix 2	AA2	B	30	41	Right-handed alpha
Helix 3	AA3	B	49	76	Right-handed alpha
Helix 4	AA4	B	82	93	Right-handed alpha
Helix 5	AA5	C	16	22	Right-handed alpha
Helix 6	AA6	C	26	37	Right-handed alpha
Helix 7	AA7	C	45	73	Right-handed alpha
Helix 8	AA8	C	79	90	Right-handed alpha
Helix 9	AA9	C	90	95	Right-handed alpha
Helix 10	AB1	D	34	46	Right-handed alpha
Helix 11	AB2	D	52	81	Right-handed alpha
Helix 12	AB3	D	87	99	Right-handed alpha
Helix 13	AB4	D	101	122	Right-handed alpha
Helix 14	AB5	F	24	29	Right-handed 310
Helix 15	AB6	F	30	41	Right-handed alpha
Helix 16	AB7	F	49	76	Right-handed alpha
Helix 17	AB8	F	82	93	Right-handed alpha
Helix 18	AB9	G	16	21	Right-handed alpha
Helix 19	AC1	G	26	36	Right-handed alpha
Helix 20	AC2	G	45	73	Right-handed alpha
Helix 21	AC3	G	79	90	Right-handed alpha
Helix 22	AC4	G	90	95	Right-handed alpha
Helix 23	AC5	H	34	46	Right-handed alpha
Helix 24	AC6	H	52	81	Right-handed alpha
Helix 25	AC7	H	87	99	Right-handed alpha
Helix 26	AC8	H	101	121	Right-handed alpha
Helix 27	AC9	E	44	55	Right-handed alpha
Helix 28	AD1	E	63	76	Right-handed alpha
Helix 29	AD2	E	85	114	Right-handed alpha
Helix 30	AD3	E	120	132	Right-handed alpha
Helix 31	AD4	A	44	55	Right-handed alpha
Helix 32	AD5	A	63	76	Right-handed alpha
Helix 33	AD6	A	85	114	Right-handed alpha
Helix 34	AD7	A	120	132	Right-handed alpha
Helix 35	AD8	L	203	209	Right-handed alpha
Helix 36	AD9	L	229	234	Right-handed alpha
Helix 37	AE1	L	238	259	Right-handed alpha
Helix 38	AE2	L	263	283	Right-handed alpha
Helix 39	AE3	L	315	319	Right-handed 310
Helix 40	AE4	L	324	331	Right-handed alpha
Helix 41	AE5	L	331	343	Right-handed alpha
Helix 42	AE6	L	377	392	Right-handed alpha
Helix 43	AE7	L	406	421	Right-handed alpha
Helix 44	AE8	L	436	448	Right-handed alpha
Helix 45	AE9	L	459	470	Right-handed alpha
Helix 46	AF1	L	491	498	Right-handed alpha
Helix 47	AF2	L	498	503	Right-handed alpha
Helix 48	AF3	L	515	520	Right-handed 310
Helix 49	AF4	L	523	531	Right-handed alpha
Helix 50	AF5	L	548	560	Right-handed alpha
Helix 51	AF6	L	576	590	Right-handed alpha
Helix 52	AF7	L	619	631	Right-handed alpha
Helix 53	AF8	L	633	639	Right-handed alpha
Helix 54	AF9	L	650	661	Right-handed alpha
Helix 55	AG1	L	662	665	Right-handed 310
Helix 56	AG2	L	668	676	Right-handed alpha
Helix 57	AG3	L	684	694	Right-handed alpha
Helix 58	AG4	L	695	710	Right-handed alpha
Helix 59	AG5	L	720	735	Right-handed alpha
Helix 60	AG6	L	746	758	Right-handed alpha
Helix 61	AG7	L	794	803	Right-handed alpha
Helix 62	AG8	L	825	843	Right-handed alpha
Helix 63	AG9	L	865	874	Right-handed alpha
Helix 64	AH1	L	931	936	Right-handed alpha
Helix 65	AH2	L	937	954	Right-handed alpha
Helix 66	AH3	K	142	147	Right-handed 310
Helix 67	AH4	K	229	234	Right-handed alpha
Helix 68	AH5	K	238	259	Right-handed alpha
Helix 69	AH6	K	263	283	Right-handed alpha
Helix 70	AH7	K	315	319	Right-handed 310
Helix 71	AH8	K	324	331	Right-handed alpha
Helix 72	AH9	K	331	343	Right-handed alpha
Helix 73	AI1	K	347	351	Right-handed 310
Helix 74	AI2	K	377	393	Right-handed alpha
Helix 75	AI3	K	406	421	Right-handed alpha
Helix 76	AI4	K	436	448	Right-handed alpha
Helix 77	AI5	K	459	471	Right-handed alpha
Helix 78	AI6	K	491	498	Right-handed alpha
Helix 79	AI7	K	498	504	Right-handed alpha
Helix 80	AI8	K	516	520	Right-handed 310
Helix 81	AI9	K	523	531	Right-handed alpha
Helix 82	AJ1	K	548	560	Right-handed alpha
Helix 83	AJ2	K	576	590	Right-handed alpha
Helix 84	AJ3	K	619	631	Right-handed alpha
Helix 85	AJ4	K	633	639	Right-handed alpha
Helix 86	AJ5	K	650	661	Right-handed alpha
Helix 87	AJ6	K	662	665	Right-handed 310
Helix 88	AJ7	K	668	677	Right-handed alpha
Helix 89	AJ8	K	683	693	Right-handed alpha
Helix 90	AJ9	K	696	710	Right-handed alpha
Helix 91	AK1	K	720	735	Right-handed alpha
Helix 92	AK2	K	746	758	Right-handed alpha
Helix 93	AK3	K	794	803	Right-handed alpha
Helix 94	AK4	K	825	844	Right-handed alpha
Helix 95	AK5	K	845	848	Right-handed 310
Helix 96	AK6	K	857	873	Right-handed alpha
Helix 97	AK7	K	913	917	Right-handed alpha
Helix 98	AK8	K	937	954	Right-handed alpha
Helix 99	AK9	K	1011	1025	Right-handed alpha
Helix 100	AL1	K	1031	1038	Right-handed alpha
Helix 101	AL2	K	1045	1090	Right-handed alpha
Helix 102	AL3	K	1104	1113	Right-handed alpha
Helix 103	AL4	K	1130	1151	Right-handed alpha
Helix 104	AL5	K	1154	1158	Right-handed 310
Helix 105	AL6	K	1176	1190	Right-handed alpha
Helix 106	AL7	K	1194	1201	Right-handed alpha
Helix 107	AL8	K	1249	1265	Right-handed alpha

There are 19 sheets in PDB entry 9N6K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	A	118	119	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	A	83	84	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	E	118	119	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	81	first strand
Strand 2	E	83	84	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	179	186	first strand
Strand 2	L	212	217	anti-parallel
Strand 3	L	226	228	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	287	296	first strand
Strand 2	L	304	311	anti-parallel
Strand 3	L	320	323	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	455	first strand
Strand 2	L	487	490	parallel
Strand 3	L	428	431	parallel
Strand 4	L	507	513	parallel
Strand 5	L	534	540	parallel
Strand 6	L	397	399	parallel
Strand 7	L	594	595	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	738	741	first strand
Strand 2	L	766	770	parallel
Strand 3	L	714	718	parallel
Strand 4	L	785	788	parallel
Strand 5	L	814	821	parallel
Strand 6	L	609	616	parallel
Strand 7	L	923	924	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	179	186	first strand
Strand 2	K	212	217	anti-parallel
Strand 3	K	226	228	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	287	296	first strand
Strand 2	K	304	311	anti-parallel
Strand 3	K	320	323	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	456	first strand
Strand 2	K	487	490	parallel
Strand 3	K	428	431	parallel
Strand 4	K	507	513	parallel
Strand 5	K	534	540	parallel
Strand 6	K	397	399	parallel
Strand 7	K	594	595	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	738	741	first strand
Strand 2	K	766	770	parallel
Strand 3	K	714	718	parallel
Strand 4	K	785	788	parallel
Strand 5	K	814	821	parallel
Strand 6	K	609	616	parallel
Strand 7	K	923	926	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1119	1120	first strand
Strand 2	K	1128	1129	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N6K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N6K