Analysis of interatomic Contacts of Structural Units in PDB entry:
9N6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N6T entry

There are 4 chains in PDB entry 9N6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 36 T 61
C
 A 26 C 37
D
 A 12 G 98
A
 ASN 1ASN 1628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 9N6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
51 81Right-handed alpha
Helix 3
AA3
A
87 99Right-handed alpha
Helix 4
AA4
A
292 307Right-handed alpha
Helix 5
AA5
A
310 324Right-handed alpha
Helix 6
AA6
A
329 341Right-handed alpha
Helix 7
AA7
A
348 361Right-handed alpha
Helix 8
AA8
A
363 372Right-handed alpha
Helix 9
AA9
A
373 378Right-handed 310
Helix 10
AB1
A
383 399Right-handed alpha
Helix 11
AB2
A
415 428Right-handed alpha
Helix 12
AB3
A
431 437Right-handed alpha
Helix 13
AB4
A
440 445Right-handed 310
Helix 14
AB5
A
465 473Right-handed alpha
Helix 15
AB6
A
475 485Right-handed alpha
Helix 16
AB7
A
486 494Right-handed alpha
Helix 17
AB8
A
495 502Right-handed alpha
Helix 18
AB9
A
519 524Right-handed alpha
Helix 19
AC1
A
529 542Right-handed alpha
Helix 20
AC2
A
544 548Right-handed 310
Helix 21
AC3
A
551 564Right-handed alpha
Helix 22
AC4
A
576 586Right-handed alpha
Helix 23
AC5
A
605 622Right-handed alpha
Helix 24
AC6
A
662 665Right-handed 310
Helix 25
AC7
A
666 675Right-handed alpha
Helix 26
AC8
A
813 824Right-handed alpha
Helix 27
AC9
A
858 886Right-handed alpha
Helix 28
AD1
A
899 911Right-handed alpha
Helix 29
AD2
A
916 924Right-handed alpha
Helix 30
AD3
A
925 927Right-handed 310
Helix 31
AD4
A
1088 1109Right-handed alpha
Helix 32
AD5
A
1112 1114Right-handed 310
Helix 33
AD6
A
1126 1130Right-handed 310
Helix 34
AD7
A
1131 1141Right-handed alpha
Helix 35
AD8
A
1143 1148Right-handed alpha
Helix 36
AD9
A
1157 1176Right-handed alpha
Helix 37
AE1
A
1207 1212Right-handed alpha
Helix 38
AE2
A
1281 1292Right-handed alpha
Helix 39
AE3
A
1293 1295Right-handed 310
Helix 40
AE4
A
1307 1318Right-handed alpha
Helix 41
AE5
A
1332 1345Right-handed alpha
Helix 42
AE6
A
1346 1349Right-handed 310
Helix 43
AE7
A
1354 1362Right-handed alpha
Helix 44
AE8
A
1374 1384Right-handed alpha
Helix 45
AE9
A
1385 1387Right-handed 310
Helix 46
AF1
A
1397 1411Right-handed alpha
Helix 47
AF2
A
1415 1424Right-handed alpha
Helix 48
AF3
A
1429 1433Right-handed 310
Helix 49
AF4
A
1471 1475Right-handed 310
Helix 50
AF5
A
1535 1542Right-handed alpha
Helix 51
AF6
A
1568 1578Right-handed alpha
Helix 52
AF7
A
1585 1594Right-handed alpha
Helix 53
AF8
A
1607 1628Right-handed alpha
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There are 13 sheets in PDB entry 9N6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
2 4anti-parallel
Strand 3
A
889 897parallel
Strand 4
A
1116 1122parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
2 4anti-parallel
Strand 3
A
889 897parallel
Strand 4
A
7 10parallel
Strand 5
A
15 21anti-parallel
Strand 6
A
35 42anti-parallel
Strand 7
A
1219 1223parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
653 655anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 513first strand
Strand 2
A
527 528parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
600 601anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 633first strand
Strand 2
A
640 646anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
826 827first strand
Strand 2
A
843 844anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1440 1446first strand
Strand 2
A
1364 1372anti-parallel
Strand 3
A
1239 1248anti-parallel
Strand 4
A
1462 1469anti-parallel
Strand 5
A
1451 1456anti-parallel
Strand 6
A
1504 1506anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1269 1272first strand
Strand 2
A
1260 1263anti-parallel
Strand 3
A
1251 1254anti-parallel
Strand 4
A
1326 1329anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1275 1276first strand
Strand 2
A
1279 1280anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1389 1390first strand
Strand 2
A
1393 1394anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1490 1495first strand
Strand 2
A
1480 1485anti-parallel
Strand 3
A
1521 1523anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1530 1532first strand
Strand 2
A
1543 1549anti-parallel
Strand 3
A
1557 1562anti-parallel
Strand 4
A
1598 1602anti-parallel
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