Analysis of interatomic Contacts of Structural Units in PDB entry:
9N7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N7D entry

There are 2 chains in PDB entry 9N7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 18ILE 727
B
 GLU 388PRO 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9N7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 52Right-handed alpha
Helix 2
AA2
A
55 81Right-handed alpha
Helix 3
AA3
A
90 101Right-handed alpha
Helix 4
AA4
A
103 108Right-handed 310
Helix 5
AA5
A
109 130Right-handed alpha
Helix 6
AA6
A
147 155Right-handed alpha
Helix 7
AA7
A
157 172Right-handed alpha
Helix 8
AA8
A
172 193Right-handed alpha
Helix 9
AA9
A
198 204Right-handed alpha
Helix 10
AB1
A
205 208Right-handed 310
Helix 11
AB2
A
220 252Right-handed alpha
Helix 12
AB3
A
265 267Right-handed 310
Helix 13
AB4
A
275 282Right-handed 310
Helix 14
AB5
A
293 300Right-handed alpha
Helix 15
AB6
A
303 318Right-handed alpha
Helix 16
AB7
A
324 331Right-handed alpha
Helix 17
AB8
A
365 385Right-handed alpha
Helix 18
AB9
A
389 393Right-handed 310
Helix 19
AC1
A
399 413Right-handed alpha
Helix 20
AC2
A
414 421Right-handed alpha
Helix 21
AC3
A
431 465Right-handed alpha
Helix 22
AC4
A
469 471Right-handed 310
Helix 23
AC5
A
472 484Right-handed alpha
Helix 24
AC6
A
499 502Right-handed 310
Helix 25
AC7
A
503 508Right-handed alpha
Helix 26
AC8
A
513 533Right-handed alpha
Helix 27
AC9
A
538 542Right-handed 310
Helix 28
AD1
A
547 559Right-handed alpha
Helix 29
AD2
A
565 575Right-handed alpha
Helix 30
AD3
A
581 588Right-handed alpha
Helix 31
AD4
A
588 599Right-handed alpha
Helix 32
AD5
A
636 659Right-handed alpha
Helix 33
AD6
A
666 668Right-handed 310
Helix 34
AD7
A
696 707Right-handed alpha
Helix 35
AD8
A
707 716Right-handed alpha
Helix 36
AD9
B
391 397Right-handed alpha
Helix 37
AE1
B
401 405Right-handed 310
Helix 38
AE2
B
416 422Right-handed alpha
Helix 39
AE3
B
435 441Right-handed alpha
Helix 40
AE4
B
455 463Right-handed 310
Helix 41
AE5
B
468 474Right-handed alpha
Helix 42
AE6
B
530 535Right-handed 310
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There are 7 sheets in PDB entry 9N7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
670 673first strand
Strand 2
A
680 685anti-parallel
Strand 3
A
618 622anti-parallel
Strand 4
A
722 724anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 410first strand
Strand 2
B
444 453anti-parallel
Strand 3
B
566 575anti-parallel
Strand 4
B
483 489anti-parallel
Strand 5
B
425 431anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 410first strand
Strand 2
B
444 453anti-parallel
Strand 3
B
581 582anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
516 519first strand
Strand 2
B
501 512anti-parallel
Strand 3
B
552 560anti-parallel
Strand 4
B
543 547anti-parallel
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