Analysis of interatomic Contacts of Structural Units in PDB entry:
9N7E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N7E entry

There are 2 chains in PDB entry 9N7E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 18LEU 731
B
 GLU 356MET 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 9N7E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 52Right-handed alpha
Helix 2
AA2
A
55 81Right-handed alpha
Helix 3
AA3
A
82 83Right-handed 310
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
90 101Right-handed alpha
Helix 6
AA6
A
103 108Right-handed 310
Helix 7
AA7
A
109 129Right-handed alpha
Helix 8
AA8
A
144 154Right-handed alpha
Helix 9
AA9
A
156 193Right-handed alpha
Helix 10
AB1
A
197 203Right-handed alpha
Helix 11
AB2
A
204 206Right-handed 310
Helix 12
AB3
A
218 251Right-handed alpha
Helix 13
AB4
A
264 266Right-handed 310
Helix 14
AB5
A
274 276Right-handed 310
Helix 15
AB6
A
277 282Right-handed alpha
Helix 16
AB7
A
292 299Right-handed alpha
Helix 17
AB8
A
302 317Right-handed alpha
Helix 18
AB9
A
323 330Right-handed alpha
Helix 19
AC1
A
364 384Right-handed alpha
Helix 20
AC2
A
388 392Right-handed 310
Helix 21
AC3
A
398 412Right-handed alpha
Helix 22
AC4
A
413 420Right-handed alpha
Helix 23
AC5
A
430 446Right-handed alpha
Helix 24
AC6
A
448 465Right-handed alpha
Helix 25
AC7
A
468 470Right-handed 310
Helix 26
AC8
A
471 483Right-handed alpha
Helix 27
AC9
A
498 501Right-handed 310
Helix 28
AD1
A
502 507Right-handed alpha
Helix 29
AD2
A
512 532Right-handed alpha
Helix 30
AD3
A
537 541Right-handed 310
Helix 31
AD4
A
546 558Right-handed alpha
Helix 32
AD5
A
564 574Right-handed alpha
Helix 33
AD6
A
580 587Right-handed alpha
Helix 34
AD7
A
587 599Right-handed alpha
Helix 35
AD8
A
619 623Right-handed 310
Helix 36
AD9
A
642 664Right-handed alpha
Helix 37
AE1
A
702 713Right-handed alpha
Helix 38
AE2
A
713 718Right-handed alpha
Helix 39
AE3
B
359 363Right-handed 310
Helix 40
AE4
B
369 373Right-handed 310
Helix 41
AE5
B
384 391Right-handed alpha
Helix 42
AE6
B
403 410Right-handed alpha
Helix 43
AE7
B
423 431Right-handed 310
Helix 44
AE8
B
436 442Right-handed alpha
Helix 45
AE9
B
497 502Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 9N7E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
486 487parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 349first strand
Strand 2
A
355 358anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 682first strand
Strand 2
A
686 691anti-parallel
Strand 3
A
624 627anti-parallel
Strand 4
A
729 731anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 378first strand
Strand 2
B
412 421anti-parallel
Strand 3
B
547 551anti-parallel
Strand 4
B
382 383parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 378first strand
Strand 2
B
412 421anti-parallel
Strand 3
B
533 542anti-parallel
Strand 4
B
451 457anti-parallel
Strand 5
B
396 400anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
483 486first strand
Strand 2
B
469 480anti-parallel
Strand 3
B
519 527anti-parallel
Strand 4
B
510 514anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il