Analysis of interatomic Contacts of Structural Units in PDB entry:
9N82

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N82 entry

There are 18 chains in PDB entry 9N82 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 538
B	ASN 6	ALA 542
C	PRO -1	SER 299
D	MET 1	ALA 201
E	MET 1	ALA 201
F	SER 7	LEU 910
G	CYS 180	GLU 203
H	CYS 180	ASP 202
I	A 30	C 68
J	A 31	C 68
K	G 1	T 35
L	A 1	T 34
a	TYR 32	GLY 538
b	ASN 6	ALA 542
c	VAL 0	SER 299
d	MET 1	ALA 201
e	MET 1	ALA 201
f	SER 656	LEU 910

There are143 helices in PDB entry 9N82. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	9	Right-handed alpha
Helix 2	AA2	A	45	50	Right-handed 310
Helix 3	AA3	A	58	78	Right-handed alpha
Helix 4	AA4	A	112	121	Right-handed alpha
Helix 5	AA5	A	124	135	Right-handed alpha
Helix 6	AA6	A	142	157	Right-handed alpha
Helix 7	AA7	A	179	197	Right-handed alpha
Helix 8	AA8	A	216	221	Right-handed alpha
Helix 9	AA9	A	237	244	Right-handed alpha
Helix 10	AB1	A	330	337	Right-handed alpha
Helix 11	AB2	A	354	356	Right-handed 310
Helix 12	AB3	A	377	393	Right-handed alpha
Helix 13	AB4	A	455	469	Right-handed alpha
Helix 14	AB5	A	480	496	Right-handed alpha
Helix 15	AB6	A	510	518	Right-handed alpha
Helix 16	AB7	A	520	530	Right-handed alpha
Helix 17	AB8	B	24	28	Right-handed 310
Helix 18	AB9	B	29	48	Right-handed alpha
Helix 19	AC1	B	87	96	Right-handed alpha
Helix 20	AC2	B	106	121	Right-handed alpha
Helix 21	AC3	B	146	158	Right-handed alpha
Helix 22	AC4	B	198	216	Right-handed alpha
Helix 23	AC5	B	217	224	Right-handed 310
Helix 24	AC6	B	226	234	Right-handed alpha
Helix 25	AC7	B	285	287	Right-handed 310
Helix 26	AC8	B	306	308	Right-handed 310
Helix 27	AC9	B	324	332	Right-handed alpha
Helix 28	AD1	B	349	351	Right-handed 310
Helix 29	AD2	B	352	356	Right-handed 310
Helix 30	AD3	B	370	388	Right-handed alpha
Helix 31	AD4	B	426	430	Right-handed 310
Helix 32	AD5	B	447	461	Right-handed alpha
Helix 33	AD6	B	484	500	Right-handed alpha
Helix 34	AD7	B	509	516	Right-handed alpha
Helix 35	AD8	B	519	537	Right-handed alpha
Helix 36	AD9	C	0	10	Right-handed alpha
Helix 37	AE1	C	52	62	Right-handed alpha
Helix 38	AE2	C	68	86	Right-handed alpha
Helix 39	AE3	C	127	170	Right-handed alpha
Helix 40	AE4	C	185	197	Right-handed alpha
Helix 41	AE5	C	197	202	Right-handed alpha
Helix 42	AE6	C	207	214	Right-handed alpha
Helix 43	AE7	C	215	229	Right-handed alpha
Helix 44	AE8	D	49	60	Right-handed alpha
Helix 45	AE9	D	62	75	Right-handed alpha
Helix 46	AF1	D	118	201	Right-handed alpha
Helix 47	AF2	E	49	60	Right-handed alpha
Helix 48	AF3	E	62	75	Right-handed alpha
Helix 49	AF4	E	118	201	Right-handed alpha
Helix 50	AF5	F	9	13	Right-handed 310
Helix 51	AF6	F	15	28	Right-handed alpha
Helix 52	AF7	F	31	54	Right-handed alpha
Helix 53	AF8	F	64	72	Right-handed alpha
Helix 54	AF9	F	73	76	Right-handed 310
Helix 55	AG1	F	85	98	Right-handed alpha
Helix 56	AG2	F	103	111	Right-handed alpha
Helix 57	AG3	F	114	118	Right-handed 310
Helix 58	AG4	F	124	134	Right-handed alpha
Helix 59	AG5	F	144	161	Right-handed alpha
Helix 60	AG6	F	164	177	Right-handed alpha
Helix 61	AG7	F	179	192	Right-handed alpha
Helix 62	AG8	F	199	208	Right-handed alpha
Helix 63	AG9	F	211	219	Right-handed alpha
Helix 64	AH1	F	220	228	Right-handed alpha
Helix 65	AH2	F	258	263	Right-handed alpha
Helix 66	AH3	F	298	303	Right-handed alpha
Helix 67	AH4	F	311	316	Right-handed alpha
Helix 68	AH5	F	317	319	Right-handed 310
Helix 69	AH6	F	381	391	Right-handed alpha
Helix 70	AH7	F	410	424	Right-handed alpha
Helix 71	AH8	F	674	685	Right-handed alpha
Helix 72	AH9	F	706	715	Right-handed alpha
Helix 73	AI1	F	723	733	Right-handed alpha
Helix 74	AI2	F	747	756	Right-handed alpha
Helix 75	AI3	F	770	781	Right-handed alpha
Helix 76	AI4	F	788	804	Right-handed alpha
Helix 77	AI5	F	836	848	Right-handed alpha
Helix 78	AI6	F	871	882	Right-handed alpha
Helix 79	AI7	F	891	901	Right-handed alpha
Helix 80	AI8	F	906	910	Right-handed 310
Helix 81	AI9	a	45	50	Right-handed 310
Helix 82	AJ1	a	58	78	Right-handed alpha
Helix 83	AJ2	a	112	121	Right-handed alpha
Helix 84	AJ3	a	124	135	Right-handed alpha
Helix 85	AJ4	a	142	157	Right-handed alpha
Helix 86	AJ5	a	179	197	Right-handed alpha
Helix 87	AJ6	a	216	221	Right-handed alpha
Helix 88	AJ7	a	237	244	Right-handed alpha
Helix 89	AJ8	a	312	314	Right-handed 310
Helix 90	AJ9	a	330	337	Right-handed alpha
Helix 91	AK1	a	354	356	Right-handed 310
Helix 92	AK2	a	357	361	Right-handed 310
Helix 93	AK3	a	377	393	Right-handed alpha
Helix 94	AK4	a	455	469	Right-handed alpha
Helix 95	AK5	a	480	496	Right-handed alpha
Helix 96	AK6	a	510	519	Right-handed alpha
Helix 97	AK7	a	520	530	Right-handed alpha
Helix 98	AK8	b	17	21	Right-handed 310
Helix 99	AK9	b	29	48	Right-handed alpha
Helix 100	AL1	b	87	97	Right-handed alpha
Helix 101	AL2	b	106	123	Right-handed alpha
Helix 102	AL3	b	146	158	Right-handed alpha
Helix 103	AL4	b	198	216	Right-handed alpha
Helix 104	AL5	b	217	222	Right-handed 310
Helix 105	AL6	b	227	234	Right-handed alpha
Helix 106	AL7	b	306	308	Right-handed 310
Helix 107	AL8	b	324	332	Right-handed alpha
Helix 108	AL9	b	349	351	Right-handed 310
Helix 109	AM1	b	352	356	Right-handed 310
Helix 110	AM2	b	370	388	Right-handed alpha
Helix 111	AM3	b	447	461	Right-handed alpha
Helix 112	AM4	b	478	482	Right-handed 310
Helix 113	AM5	b	484	500	Right-handed alpha
Helix 114	AM6	b	509	516	Right-handed alpha
Helix 115	AM7	b	519	526	Right-handed alpha
Helix 116	AM8	b	526	537	Right-handed alpha
Helix 117	AM9	c	1	11	Right-handed alpha
Helix 118	AN1	c	51	62	Right-handed alpha
Helix 119	AN2	c	68	86	Right-handed alpha
Helix 120	AN3	c	127	171	Right-handed alpha
Helix 121	AN4	c	176	180	Right-handed 310
Helix 122	AN5	c	185	197	Right-handed alpha
Helix 123	AN6	c	197	202	Right-handed alpha
Helix 124	AN7	c	207	214	Right-handed alpha
Helix 125	AN8	c	215	228	Right-handed alpha
Helix 126	AN9	c	295	299	Right-handed 310
Helix 127	AO1	d	27	31	Right-handed 310
Helix 128	AO2	d	48	60	Right-handed alpha
Helix 129	AO3	d	62	75	Right-handed alpha
Helix 130	AO4	d	118	201	Right-handed alpha
Helix 131	AO5	e	49	60	Right-handed alpha
Helix 132	AO6	e	62	75	Right-handed alpha
Helix 133	AO7	e	118	201	Right-handed alpha
Helix 134	AO8	f	674	686	Right-handed alpha
Helix 135	AO9	f	706	715	Right-handed alpha
Helix 136	AP1	f	723	733	Right-handed alpha
Helix 137	AP2	f	747	758	Right-handed alpha
Helix 138	AP3	f	770	781	Right-handed alpha
Helix 139	AP4	f	788	804	Right-handed alpha
Helix 140	AP5	f	836	848	Right-handed alpha
Helix 141	AP6	f	871	882	Right-handed alpha
Helix 142	AP7	f	891	899	Right-handed alpha
Helix 143	AP8	f	905	910	Right-handed 310

There are 39 sheets in PDB entry 9N82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	109	first strand
Strand 2	A	82	88	anti-parallel
Strand 3	A	35	43	parallel
Strand 4	A	161	170	parallel
Strand 5	A	199	204	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	231	232	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	262	first strand
Strand 2	A	268	274	anti-parallel
Strand 3	A	366	370	anti-parallel
Strand 4	A	431	436	anti-parallel
Strand 5	A	409	416	anti-parallel
Strand 6	A	394	401	anti-parallel
Strand 7	A	344	352	anti-parallel
Strand 8	A	257	262	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	289	first strand
Strand 2	B	310	316	anti-parallel
Strand 3	B	319	322	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	304	first strand
Strand 2	B	289	297	anti-parallel
Strand 3	B	304	305	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	329	first strand
Strand 2	A	316	321	anti-parallel
Strand 3	B	277	280	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	B	540	541	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	420	first strand
Strand 2	A	426	428	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	84	first strand
Strand 2	B	53	59	anti-parallel
Strand 3	B	8	15	parallel
Strand 4	B	129	135	parallel
Strand 5	B	160	164	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	253	first strand
Strand 2	B	257	267	anti-parallel
Strand 3	B	357	366	anti-parallel
Strand 4	B	417	423	anti-parallel
Strand 5	B	404	412	anti-parallel
Strand 6	B	389	396	anti-parallel
Strand 7	B	339	347	anti-parallel
Strand 8	B	247	253	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	466	first strand
Strand 2	B	473	475	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	18	first strand
Strand 2	C	21	30	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	44	50	anti-parallel
Strand 5	C	115	125	anti-parallel
Strand 6	C	103	112	anti-parallel
Strand 7	C	94	100	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	E	104	111	anti-parallel
Strand 3	E	94	101	anti-parallel
Strand 4	E	83	89	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	9	first strand
Strand 2	D	17	24	anti-parallel
Strand 3	D	31	37	anti-parallel
Strand 4	D	42	48	anti-parallel
Strand 5	D	114	115	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	89	first strand
Strand 2	D	94	101	anti-parallel
Strand 3	D	104	107	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	8	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	31	37	anti-parallel
Strand 4	E	42	48	anti-parallel
Strand 5	E	114	115	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	250	253	first strand
Strand 2	F	443	450	parallel
Strand 3	F	429	432	anti-parallel
Strand 4	F	268	272	anti-parallel
Strand 5	F	405	408	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	287	291	first strand
Strand 2	F	277	284	anti-parallel
Strand 3	F	325	336	anti-parallel
Strand 4	F	341	343	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	287	291	first strand
Strand 2	F	277	284	anti-parallel
Strand 3	F	325	336	anti-parallel
Strand 4	F	361	372	anti-parallel
Strand 5	F	400	402	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	688	689	first strand
Strand 2	F	663	666	parallel
Strand 3	F	699	701	parallel
Strand 4	F	720	721	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	851	852	first strand
Strand 2	F	817	820	parallel
Strand 3	F	862	865	parallel
Strand 4	F	887	890	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	102	109	first strand
Strand 2	a	82	88	anti-parallel
Strand 3	a	35	43	parallel
Strand 4	a	161	170	parallel
Strand 5	a	199	204	parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	257	262	first strand
Strand 2	a	268	274	anti-parallel
Strand 3	a	366	370	anti-parallel
Strand 4	a	431	436	anti-parallel
Strand 5	a	409	416	anti-parallel
Strand 6	a	394	401	anti-parallel
Strand 7	a	344	352	anti-parallel
Strand 8	a	257	262	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	286	289	first strand
Strand 2	b	310	316	anti-parallel
Strand 3	b	319	322	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	296	304	first strand
Strand 2	b	289	297	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	326	329	first strand
Strand 2	a	316	321	anti-parallel
Strand 3	b	277	280	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	375	376	first strand
Strand 2	b	540	541	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	419	420	first strand
Strand 2	a	426	428	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	77	84	first strand
Strand 2	b	53	59	anti-parallel
Strand 3	b	9	15	parallel
Strand 4	b	130	135	parallel
Strand 5	b	160	165	parallel
Strand 6	b	224	226	parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	247	253	first strand
Strand 2	b	257	268	anti-parallel
Strand 3	b	357	366	anti-parallel
Strand 4	b	417	423	anti-parallel
Strand 5	b	404	412	anti-parallel
Strand 6	b	389	396	anti-parallel
Strand 7	b	339	347	anti-parallel
Strand 8	b	247	253	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	464	467	first strand
Strand 2	b	472	475	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	14	17	first strand
Strand 2	c	22	30	anti-parallel
Strand 3	c	33	39	anti-parallel
Strand 4	c	44	50	anti-parallel
Strand 5	c	115	125	anti-parallel
Strand 6	c	104	112	anti-parallel
Strand 7	c	93	99	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	2	8	first strand
Strand 2	d	18	24	anti-parallel
Strand 3	d	33	37	anti-parallel
Strand 4	d	42	46	anti-parallel
Strand 5	d	114	115	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	83	89	first strand
Strand 2	d	94	101	anti-parallel
Strand 3	d	104	112	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	2	8	first strand
Strand 2	e	18	24	anti-parallel
Strand 3	e	31	37	anti-parallel
Strand 4	e	42	48	anti-parallel
Strand 5	e	114	115	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	83	89	first strand
Strand 2	e	94	100	anti-parallel
Strand 3	e	105	112	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	688	689	first strand
Strand 2	f	663	666	parallel
Strand 3	f	699	701	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	720	721	first strand
Strand 2	f	743	745	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	851	852	first strand
Strand 2	f	817	820	parallel
Strand 3	f	862	865	parallel
Strand 4	f	887	890	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N82

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N82