Analysis of interatomic Contacts of Structural Units in PDB entry:
9N85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N85 entry

There are 3 chains in PDB entry 9N85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 876
B
 HIS 17LYS 160
C
 GLU 6ALA 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9N85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 9Right-handed alpha
Helix 2
AA2
A
10 12Right-handed 310
Helix 3
AA3
A
14 32Right-handed alpha
Helix 4
AA4
A
32 46Right-handed alpha
Helix 5
AA5
A
50 64Right-handed alpha
Helix 6
AA6
A
69 82Right-handed alpha
Helix 7
AA7
A
84 97Right-handed alpha
Helix 8
AA8
A
108 121Right-handed alpha
Helix 9
AA9
A
122 124Right-handed 310
Helix 10
AB1
A
129 139Right-handed alpha
Helix 11
AB2
A
143 161Right-handed alpha
Helix 12
AB3
A
169 182Right-handed alpha
Helix 13
AB4
A
187 201Right-handed alpha
Helix 14
AB5
A
203 210Right-handed 310
Helix 15
AB6
A
211 226Right-handed alpha
Helix 16
AB7
A
230 248Right-handed alpha
Helix 17
AB8
A
249 251Right-handed 310
Helix 18
AB9
A
252 257Right-handed alpha
Helix 19
AC1
A
259 269Right-handed alpha
Helix 20
AC2
A
272 304Right-handed alpha
Helix 21
AC3
A
313 330Right-handed alpha
Helix 22
AC4
A
343 360Right-handed alpha
Helix 23
AC5
A
363 375Right-handed alpha
Helix 24
AC6
A
379 393Right-handed alpha
Helix 25
AC7
A
398 417Right-handed alpha
Helix 26
AC8
A
421 439Right-handed alpha
Helix 27
AC9
A
448 460Right-handed alpha
Helix 28
AD1
A
463 484Right-handed alpha
Helix 29
AD2
A
502 515Right-handed alpha
Helix 30
AD3
A
520 522Right-handed 310
Helix 31
AD4
A
523 538Right-handed alpha
Helix 32
AD5
A
543 556Right-handed alpha
Helix 33
AD6
A
557 564Right-handed alpha
Helix 34
AD7
A
586 596Right-handed alpha
Helix 35
AD8
A
600 619Right-handed alpha
Helix 36
AD9
A
624 637Right-handed alpha
Helix 37
AE1
A
649 659Right-handed alpha
Helix 38
AE2
A
664 682Right-handed alpha
Helix 39
AE3
A
685 703Right-handed alpha
Helix 40
AE4
A
708 722Right-handed alpha
Helix 41
AE5
A
730 744Right-handed alpha
Helix 42
AE6
A
754 777Right-handed alpha
Helix 43
AE7
A
793 801Right-handed alpha
Helix 44
AE8
A
803 808Right-handed alpha
Helix 45
AE9
A
813 830Right-handed alpha
Helix 46
AF1
A
833 839Right-handed alpha
Helix 47
AF2
A
841 851Right-handed alpha
Helix 48
AF3
A
858 876Right-handed alpha
Helix 49
AF4
B
136 160Right-handed alpha
Helix 50
AF5
C
25 32Right-handed alpha
Helix 51
AF6
C
94 100Right-handed alpha
Helix 52
AF7
C
100 110Right-handed alpha
Helix 53
AF8
C
123 127Right-handed 310
Helix 54
AF9
C
132 136Right-handed 310
Helix 55
AG1
C
137 143Right-handed alpha
Helix 56
AG2
C
158 170Right-handed alpha
Helix 57
AG3
C
190 207Right-handed alpha
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There are 2 sheets in PDB entry 9N85. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
78 80anti-parallel
Strand 3
B
58 72anti-parallel
Strand 4
B
37 51anti-parallel
Strand 5
B
126 133anti-parallel
Strand 6
B
108 119anti-parallel
Strand 7
B
103 105anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 54first strand
Strand 2
C
57 66anti-parallel
Strand 3
C
10 17parallel
Strand 4
C
85 91parallel
Strand 5
C
117 122parallel
Strand 6
C
145 148parallel
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