Analysis of interatomic Contacts of Structural Units in PDB entry:
9N8F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N8F entry

There are 12 chains in PDB entry 9N8F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 32	LEU 186
D	ALA 507	GLU 611
H	VAL 2	SER 112
L	ASP 1	ARG 108
E	ALA 507	GLU 611
I	VAL 2	SER 112
M	ASP 1	ARG 108
C	SER 32	LEU 186
F	ALA 507	GLU 611
J	VAL 2	SER 112
N	ASP 1	ARG 108
B	SER 32	LEU 186

There are 27 helices in PDB entry 9N8F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	51	Right-handed 310
Helix 2	AA2	A	71	74	Right-handed 310
Helix 3	AA3	A	78	83	Right-handed alpha
Helix 4	AA4	D	532	536	Right-handed 310
Helix 5	AA5	D	550	552	Right-handed 310
Helix 6	AA6	D	553	576	Right-handed alpha
Helix 7	AA7	D	583	597	Right-handed alpha
Helix 8	AA8	H	61	64	Right-handed 310
Helix 9	AA9	L	79	83	Right-handed 310
Helix 10	AB1	E	532	536	Right-handed 310
Helix 11	AB2	E	550	552	Right-handed 310
Helix 12	AB3	E	553	576	Right-handed alpha
Helix 13	AB4	E	583	599	Right-handed alpha
Helix 14	AB5	I	61	64	Right-handed 310
Helix 15	AB6	M	79	83	Right-handed 310
Helix 16	AB7	C	47	51	Right-handed 310
Helix 17	AB8	C	71	74	Right-handed 310
Helix 18	AB9	C	78	83	Right-handed alpha
Helix 19	AC1	F	532	536	Right-handed 310
Helix 20	AC2	F	550	552	Right-handed 310
Helix 21	AC3	F	553	576	Right-handed alpha
Helix 22	AC4	F	583	598	Right-handed alpha
Helix 23	AC5	J	61	64	Right-handed 310
Helix 24	AC6	N	79	83	Right-handed 310
Helix 25	AC7	B	47	51	Right-handed 310
Helix 26	AC8	B	71	74	Right-handed 310
Helix 27	AC9	B	78	83	Right-handed alpha

There are 31 sheets in PDB entry 9N8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	63	69	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	159	161	anti-parallel
Strand 5	A	165	167	anti-parallel
Strand 6	A	96	98	anti-parallel
Strand 7	D	580	581	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	151	154	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	110	first strand
Strand 2	A	135	140	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	517	first strand
Strand 2	D	546	548	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	95	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	100	first strand
Strand 2	H	100	100	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	48	first strand
Strand 2	L	33	38	anti-parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	101	103	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	515	517	first strand
Strand 2	E	546	548	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	580	581	first strand
Strand 2	B	96	98	parallel
Strand 3	B	165	167	anti-parallel
Strand 4	B	159	161	anti-parallel
Strand 5	B	177	184	anti-parallel
Strand 6	B	64	69	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	88	94	anti-parallel
Strand 5	I	107	109	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	98	100	first strand
Strand 2	I	100	100	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	24	first strand
Strand 2	M	70	76	anti-parallel
Strand 3	M	62	67	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	49	first strand
Strand 2	M	33	38	anti-parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	101	103	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	63	69	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	159	161	anti-parallel
Strand 5	C	165	167	anti-parallel
Strand 6	C	96	98	anti-parallel
Strand 7	F	580	581	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	151	154	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	110	first strand
Strand 2	C	135	140	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	515	517	first strand
Strand 2	F	546	548	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	7	first strand
Strand 2	J	18	23	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	46	52	anti-parallel
Strand 3	J	34	39	anti-parallel
Strand 4	J	88	95	anti-parallel
Strand 5	J	102	103	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	46	52	anti-parallel
Strand 3	J	34	39	anti-parallel
Strand 4	J	88	95	anti-parallel
Strand 5	J	107	109	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	98	100	first strand
Strand 2	J	100	100	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	5	first strand
Strand 2	N	18	29	anti-parallel
Strand 3	N	62	76	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	101	104	parallel
Strand 3	N	85	90	anti-parallel
Strand 4	N	33	38	anti-parallel
Strand 5	N	45	48	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	43	46	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	89	first strand
Strand 2	B	151	154	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	135	137	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N8F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N8F