Analysis of interatomic Contacts of Structural Units in PDB entry:
9N8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9N8R entry

There is 1 chain in PDB entry 9N8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3HIS 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9N8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 20Right-handed alpha
Helix 2
AA2
A
20 25Right-handed alpha
Helix 3
AA3
A
27 46Right-handed alpha
Helix 4
AA4
A
87 92Right-handed alpha
Helix 5
AA5
A
95 101Right-handed alpha
Helix 6
AA6
A
117 134Right-handed alpha
Helix 7
AA7
A
152 161Right-handed alpha
Helix 8
AA8
A
178 185Right-handed alpha
Helix 9
AA9
A
187 192Right-handed alpha
Helix 10
AB1
A
194 201Right-handed alpha
Helix 11
AB2
A
202 206Right-handed 310
Helix 12
AB3
A
222 239Right-handed alpha
Helix 13
AB4
A
254 256Right-handed 310
Helix 14
AB5
A
257 262Right-handed alpha
Helix 15
AB6
A
267 280Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9N8R.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
61 65anti-parallel
Strand 3
A
104 108anti-parallel
Strand 4
A
74 78parallel
Strand 5
A
146 151parallel
Strand 6
A
169 173parallel
Strand 7
A
212 218parallel
Strand 8
A
243 248parallel
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