Analysis of interatomic Contacts of Structural Units in PDB entry:
9N96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N96 entry

There are 10 chains in PDB entry 9N96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LYS 84
B	THR 2	PRO 87
C	SER 6	ILE 100
D	PRO 141	ALA 359
E	PRO 17	VAL 90
F	LEU 3	GLU 76
G	ALA 4	HIS 80
J	SER 33	PRO 340
Y	U 32	A 49
Z	U 6	U 32

There are 31 helices in PDB entry 9N96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	11	Right-handed alpha
Helix 2	AA2	A	74	78	Right-handed 310
Helix 3	AA3	C	8	16	Right-handed alpha
Helix 4	AA4	C	17	23	Right-handed alpha
Helix 5	AA5	C	89	100	Right-handed alpha
Helix 6	AA6	D	154	159	Right-handed alpha
Helix 7	AA7	D	159	166	Right-handed alpha
Helix 8	AA8	E	18	28	Right-handed alpha
Helix 9	AA9	F	6	13	Right-handed alpha
Helix 10	AB1	G	9	13	Right-handed 310
Helix 11	AB2	G	63	65	Right-handed 310
Helix 12	AB3	J	36	45	Right-handed alpha
Helix 13	AB4	J	50	64	Right-handed alpha
Helix 14	AB5	J	69	74	Right-handed alpha
Helix 15	AB6	J	74	79	Right-handed alpha
Helix 16	AB7	J	80	83	Right-handed 310
Helix 17	AB8	J	85	103	Right-handed alpha
Helix 18	AB9	J	106	119	Right-handed alpha
Helix 19	AC1	J	123	147	Right-handed alpha
Helix 20	AC2	J	151	171	Right-handed alpha
Helix 21	AC3	J	172	174	Right-handed 310
Helix 22	AC4	J	176	194	Right-handed alpha
Helix 23	AC5	J	224	244	Right-handed alpha
Helix 24	AC6	J	249	267	Right-handed alpha
Helix 25	AC7	J	270	279	Right-handed alpha
Helix 26	AC8	J	290	311	Right-handed alpha
Helix 27	AC9	J	312	316	Right-handed 310
Helix 28	AD1	J	317	326	Right-handed alpha
Helix 29	AD2	J	327	329	Right-handed 310
Helix 30	AD3	J	331	336	Right-handed alpha
Helix 31	AD4	J	337	339	Right-handed 310

There are 6 sheets in PDB entry 9N96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	29	35	anti-parallel
Strand 3	A	41	47	anti-parallel
Strand 4	A	58	63	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	B	69	72	anti-parallel
Strand 3	B	40	48	anti-parallel
Strand 4	B	64	66	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	B	69	72	anti-parallel
Strand 3	B	40	48	anti-parallel
Strand 4	B	26	33	anti-parallel
Strand 5	B	16	21	anti-parallel
Strand 6	B	77	84	anti-parallel
Strand 7	C	72	74	anti-parallel
Strand 8	C	52	54	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand
Strand 2	C	58	60	anti-parallel
Strand 3	C	38	42	anti-parallel
Strand 4	C	28	33	anti-parallel
Strand 5	C	79	83	anti-parallel
Strand 6	D	347	348	anti-parallel

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There are 15 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	343	first strand
Strand 2	D	201	205	anti-parallel
Strand 3	D	179	182	anti-parallel
Strand 4	D	168	174	anti-parallel
Strand 5	D	353	359	anti-parallel
Strand 6	F	54	64	anti-parallel
Strand 7	F	42	51	anti-parallel
Strand 8	F	27	36	anti-parallel
Strand 9	F	18	23	anti-parallel
Strand 10	F	69	74	anti-parallel
Strand 11	E	71	79	anti-parallel
Strand 12	E	56	65	anti-parallel
Strand 13	E	38	49	anti-parallel
Strand 14	E	30	35	anti-parallel
Strand 15	E	84	89	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	62	first strand
Strand 2	G	40	48	anti-parallel
Strand 3	G	26	34	anti-parallel
Strand 4	G	16	21	anti-parallel
Strand 5	G	67	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N96

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N96