Analysis of interatomic Contacts of Structural Units in PDB entry:
9N9H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N9H entry

There are 5 chains in PDB entry 9N9H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 437
B	MET 1	GLN 443
M	ASN 189	GLU 591
a	MET 1	VAL 437
b	MET 1	GLN 436

There are101 helices in PDB entry 9N9H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	29	Right-handed alpha
Helix 2	AA2	A	47	51	Right-handed 310
Helix 3	AA3	A	71	81	Right-handed alpha
Helix 4	AA4	A	82	86	Right-handed 310
Helix 5	AA5	A	88	90	Right-handed 310
Helix 6	AA6	A	102	108	Right-handed alpha
Helix 7	AA7	A	109	113	Right-handed 310
Helix 8	AA8	A	114	129	Right-handed alpha
Helix 9	AA9	A	143	161	Right-handed alpha
Helix 10	AB1	A	182	197	Right-handed alpha
Helix 11	AB2	A	206	217	Right-handed alpha
Helix 12	AB3	A	223	244	Right-handed alpha
Helix 13	AB4	A	255	260	Right-handed alpha
Helix 14	AB5	A	277	282	Right-handed alpha
Helix 15	AB6	A	287	297	Right-handed alpha
Helix 16	AB7	A	298	301	Right-handed 310
Helix 17	AB8	A	306	310	Right-handed 310
Helix 18	AB9	A	324	338	Right-handed alpha
Helix 19	AC1	A	383	400	Right-handed alpha
Helix 20	AC2	A	405	410	Right-handed alpha
Helix 21	AC3	A	415	435	Right-handed alpha
Helix 22	AC4	B	10	28	Right-handed alpha
Helix 23	AC5	B	41	48	Right-handed alpha
Helix 24	AC6	B	49	51	Right-handed 310
Helix 25	AC7	B	72	80	Right-handed alpha
Helix 26	AC8	B	88	90	Right-handed 310
Helix 27	AC9	B	102	108	Right-handed alpha
Helix 28	AD1	B	108	113	Right-handed alpha
Helix 29	AD2	B	114	128	Right-handed alpha
Helix 30	AD3	B	145	161	Right-handed alpha
Helix 31	AD4	B	182	195	Right-handed alpha
Helix 32	AD5	B	205	216	Right-handed alpha
Helix 33	AD6	B	223	239	Right-handed alpha
Helix 34	AD7	B	251	260	Right-handed alpha
Helix 35	AD8	B	280	284	Right-handed 310
Helix 36	AD9	B	287	296	Right-handed alpha
Helix 37	AE1	B	297	301	Right-handed 310
Helix 38	AE2	B	306	310	Right-handed 310
Helix 39	AE3	B	324	338	Right-handed alpha
Helix 40	AE4	B	339	343	Right-handed 310
Helix 41	AE5	B	383	400	Right-handed alpha
Helix 42	AE6	B	405	410	Right-handed alpha
Helix 43	AE7	B	415	437	Right-handed alpha
Helix 44	AE8	M	194	204	Right-handed alpha
Helix 45	AE9	M	205	223	Right-handed alpha
Helix 46	AF1	M	223	231	Right-handed alpha
Helix 47	AF2	M	233	247	Right-handed alpha
Helix 48	AF3	M	273	280	Right-handed alpha
Helix 49	AF4	M	324	331	Right-handed alpha
Helix 50	AF5	M	332	340	Right-handed alpha
Helix 51	AF6	M	341	343	Right-handed 310
Helix 52	AF7	M	357	363	Right-handed alpha
Helix 53	AF8	M	376	390	Right-handed alpha
Helix 54	AF9	M	391	396	Right-handed alpha
Helix 55	AG1	M	445	461	Right-handed alpha
Helix 56	AG2	M	506	533	Right-handed alpha
Helix 57	AG3	M	542	545	Right-handed 310
Helix 58	AG4	M	546	557	Right-handed alpha
Helix 59	AG5	M	572	574	Right-handed 310
Helix 60	AG6	M	575	591	Right-handed alpha
Helix 61	AG7	a	10	29	Right-handed alpha
Helix 62	AG8	a	47	51	Right-handed 310
Helix 63	AG9	a	71	79	Right-handed alpha
Helix 64	AH1	a	88	90	Right-handed 310
Helix 65	AH2	a	102	108	Right-handed alpha
Helix 66	AH3	a	110	129	Right-handed alpha
Helix 67	AH4	a	143	161	Right-handed alpha
Helix 68	AH5	a	182	190	Right-handed alpha
Helix 69	AH6	a	190	197	Right-handed alpha
Helix 70	AH7	a	206	217	Right-handed alpha
Helix 71	AH8	a	223	240	Right-handed alpha
Helix 72	AH9	a	241	243	Right-handed 310
Helix 73	AI1	a	251	260	Right-handed alpha
Helix 74	AI2	a	287	295	Right-handed alpha
Helix 75	AI3	a	296	301	Right-handed 310
Helix 76	AI4	a	324	337	Right-handed alpha
Helix 77	AI5	a	384	400	Right-handed alpha
Helix 78	AI6	a	404	410	Right-handed alpha
Helix 79	AI7	a	414	435	Right-handed alpha
Helix 80	AI8	b	10	28	Right-handed alpha
Helix 81	AI9	b	41	48	Right-handed alpha
Helix 82	AJ1	b	49	51	Right-handed 310
Helix 83	AJ2	b	71	80	Right-handed alpha
Helix 84	AJ3	b	88	90	Right-handed 310
Helix 85	AJ4	b	102	108	Right-handed alpha
Helix 86	AJ5	b	108	129	Right-handed alpha
Helix 87	AJ6	b	144	161	Right-handed alpha
Helix 88	AJ7	b	182	198	Right-handed alpha
Helix 89	AJ8	b	206	216	Right-handed alpha
Helix 90	AJ9	b	223	239	Right-handed alpha
Helix 91	AK1	b	240	243	Right-handed 310
Helix 92	AK2	b	251	260	Right-handed alpha
Helix 93	AK3	b	280	284	Right-handed 310
Helix 94	AK4	b	287	297	Right-handed alpha
Helix 95	AK5	b	298	301	Right-handed 310
Helix 96	AK6	b	306	310	Right-handed 310
Helix 97	AK7	b	324	339	Right-handed alpha
Helix 98	AK8	b	340	343	Right-handed 310
Helix 99	AK9	b	383	402	Right-handed alpha
Helix 100	AL1	b	405	410	Right-handed alpha
Helix 101	AL2	b	414	435	Right-handed alpha

There are 15 sheets in PDB entry 9N9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	5	9	parallel
Strand 4	A	135	138	parallel
Strand 5	A	166	168	parallel
Strand 6	A	200	201	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	204	205	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	356	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	2	9	parallel
Strand 4	B	131	140	parallel
Strand 5	B	166	171	parallel
Strand 6	B	200	204	parallel
Strand 7	B	267	273	parallel
Strand 8	B	374	381	anti-parallel
Strand 9	B	312	320	anti-parallel
Strand 10	B	351	356	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	60	63	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	317	319	first strand
Strand 2	M	265	269	parallel
Strand 3	M	561	569	parallel
Strand 4	M	345	352	parallel
Strand 5	M	487	496	parallel
Strand 6	M	475	484	anti-parallel
Strand 7	M	399	409	anti-parallel
Strand 8	M	412	415	anti-parallel
Strand 9	M	421	422	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	317	319	first strand
Strand 2	M	265	269	parallel
Strand 3	M	561	569	parallel
Strand 4	M	345	352	parallel
Strand 5	M	487	496	parallel
Strand 6	M	475	484	anti-parallel
Strand 7	M	399	409	anti-parallel
Strand 8	M	441	442	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	285	286	first strand
Strand 2	M	292	300	anti-parallel
Strand 3	M	306	314	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	424	427	first strand
Strand 2	M	433	436	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	92	94	first strand
Strand 2	a	65	69	parallel
Strand 3	a	5	9	parallel
Strand 4	a	135	140	parallel
Strand 5	a	166	172	parallel
Strand 6	a	200	205	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	53	55	first strand
Strand 2	a	61	63	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	269	273	first strand
Strand 2	a	373	381	anti-parallel
Strand 3	a	312	321	anti-parallel
Strand 4	a	351	356	parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	92	94	first strand
Strand 2	b	65	69	parallel
Strand 3	b	4	9	parallel
Strand 4	b	134	140	parallel
Strand 5	b	165	172	parallel
Strand 6	b	200	205	parallel
Strand 7	b	267	273	parallel
Strand 8	b	374	381	anti-parallel
Strand 9	b	312	320	anti-parallel
Strand 10	b	351	356	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	53	56	first strand
Strand 2	b	60	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N9H

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N9H