Analysis of interatomic Contacts of Structural Units in PDB entry:
9N9W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9N9W entry

There is 1 chain in PDB entry 9N9W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 3	LEU 1334

There are 38 helices in PDB entry 9N9W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	30	Right-handed alpha
Helix 2	AA2	A	53	65	Right-handed alpha
Helix 3	AA3	A	98	111	Right-handed alpha
Helix 4	AA4	A	134	146	Right-handed alpha
Helix 5	AA5	A	180	191	Right-handed alpha
Helix 6	AA6	A	199	211	Right-handed alpha
Helix 7	AA7	A	215	226	Right-handed alpha
Helix 8	AA8	A	249	256	Right-handed alpha
Helix 9	AA9	A	312	318	Right-handed alpha
Helix 10	AB1	A	318	336	Right-handed alpha
Helix 11	AB2	A	377	397	Right-handed alpha
Helix 12	AB3	A	488	504	Right-handed alpha
Helix 13	AB4	A	520	530	Right-handed alpha
Helix 14	AB5	A	550	556	Right-handed alpha
Helix 15	AB6	A	571	579	Right-handed alpha
Helix 16	AB7	A	629	633	Right-handed alpha
Helix 17	AB8	A	660	669	Right-handed alpha
Helix 18	AB9	A	677	682	Right-handed alpha
Helix 19	AC1	A	728	732	Right-handed 310
Helix 20	AC2	A	735	752	Right-handed alpha
Helix 21	AC3	A	776	796	Right-handed alpha
Helix 22	AC4	A	866	871	Right-handed alpha
Helix 23	AC5	A	884	901	Right-handed alpha
Helix 24	AC6	A	914	925	Right-handed alpha
Helix 25	AC7	A	941	946	Right-handed alpha
Helix 26	AC8	A	960	971	Right-handed alpha
Helix 27	AC9	A	1003	1012	Right-handed alpha
Helix 28	AD1	A	1024	1038	Right-handed alpha
Helix 29	AD2	A	1075	1087	Right-handed alpha
Helix 30	AD3	A	1094	1101	Right-handed alpha
Helix 31	AD4	A	1117	1121	Right-handed 310
Helix 32	AD5	A	1126	1135	Right-handed alpha
Helix 33	AD6	A	1136	1148	Right-handed alpha
Helix 34	AD7	A	1158	1167	Right-handed alpha
Helix 35	AD8	A	1242	1252	Right-handed alpha
Helix 36	AD9	A	1297	1301	Right-handed 310
Helix 37	AE1	A	1311	1316	Right-handed alpha
Helix 38	AE2	A	1322	1334	Right-handed alpha

There are 14 sheets in PDB entry 9N9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	35	46	anti-parallel
Strand 3	A	116	128	anti-parallel
Strand 4	A	85	90	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	238	241	anti-parallel
Strand 3	A	640	643	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	286	first strand
Strand 2	A	293	306	anti-parallel
Strand 3	A	1089	1092	anti-parallel
Strand 4	A	1064	1066	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	310	first strand
Strand 2	A	426	432	anti-parallel
Strand 3	A	342	349	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	411	first strand
Strand 2	A	417	419	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	516	first strand
Strand 2	A	562	567	anti-parallel
Strand 3	A	450	453	anti-parallel
Strand 4	A	586	587	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	591	first strand
Strand 2	A	534	538	anti-parallel
Strand 3	A	597	601	parallel
Strand 4	A	626	628	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	694	first strand
Strand 2	A	709	712	anti-parallel
Strand 3	A	720	724	anti-parallel
Strand 4	A	827	831	anti-parallel
Strand 5	A	763	764	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	767	768	first strand
Strand 2	A	823	824	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	810	812	first strand
Strand 2	A	815	817	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	956	957	first strand
Strand 2	A	849	855	anti-parallel
Strand 3	A	974	980	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	930	934	first strand
Strand 2	A	990	994	parallel
Strand 3	A	997	1002	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1192	1195	first strand
Strand 2	A	1237	1240	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1226	1233	first strand
Strand 2	A	1203	1211	anti-parallel
Strand 3	A	1257	1259	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9N9W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9N9W