Analysis of interatomic Contacts of Structural Units in PDB entry:
9NB3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NB3 entry

There is 1 chain in PDB entry 9NB3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 3	GLU 1335

There are 43 helices in PDB entry 9NB3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	30	Right-handed alpha
Helix 2	AA2	A	53	65	Right-handed alpha
Helix 3	AA3	A	98	110	Right-handed alpha
Helix 4	AA4	A	135	146	Right-handed alpha
Helix 5	AA5	A	179	181	Right-handed 310
Helix 6	AA6	A	182	191	Right-handed alpha
Helix 7	AA7	A	198	203	Right-handed alpha
Helix 8	AA8	A	203	208	Right-handed alpha
Helix 9	AA9	A	249	256	Right-handed alpha
Helix 10	AB1	A	257	261	Right-handed 310
Helix 11	AB2	A	312	318	Right-handed alpha
Helix 12	AB3	A	318	336	Right-handed alpha
Helix 13	AB4	A	377	397	Right-handed alpha
Helix 14	AB5	A	464	468	Right-handed 310
Helix 15	AB6	A	488	504	Right-handed alpha
Helix 16	AB7	A	521	529	Right-handed alpha
Helix 17	AB8	A	540	542	Right-handed 310
Helix 18	AB9	A	550	556	Right-handed alpha
Helix 19	AC1	A	571	583	Right-handed alpha
Helix 20	AC2	A	629	633	Right-handed alpha
Helix 21	AC3	A	660	669	Right-handed alpha
Helix 22	AC4	A	729	734	Right-handed 310
Helix 23	AC5	A	735	752	Right-handed alpha
Helix 24	AC6	A	758	761	Right-handed 310
Helix 25	AC7	A	776	796	Right-handed alpha
Helix 26	AC8	A	866	872	Right-handed alpha
Helix 27	AC9	A	884	902	Right-handed alpha
Helix 28	AD1	A	914	925	Right-handed alpha
Helix 29	AD2	A	940	946	Right-handed alpha
Helix 30	AD3	A	960	970	Right-handed alpha
Helix 31	AD4	A	1004	1012	Right-handed alpha
Helix 32	AD5	A	1013	1020	Right-handed alpha
Helix 33	AD6	A	1024	1038	Right-handed alpha
Helix 34	AD7	A	1075	1086	Right-handed alpha
Helix 35	AD8	A	1094	1100	Right-handed alpha
Helix 36	AD9	A	1117	1122	Right-handed 310
Helix 37	AE1	A	1126	1136	Right-handed alpha
Helix 38	AE2	A	1136	1148	Right-handed alpha
Helix 39	AE3	A	1158	1167	Right-handed alpha
Helix 40	AE4	A	1242	1252	Right-handed alpha
Helix 41	AE5	A	1297	1302	Right-handed 310
Helix 42	AE6	A	1311	1316	Right-handed alpha
Helix 43	AE7	A	1322	1335	Right-handed alpha

There are 14 sheets in PDB entry 9NB3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	4	9	anti-parallel
Strand 3	A	36	46	anti-parallel
Strand 4	A	116	128	anti-parallel
Strand 5	A	85	90	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	239	241	anti-parallel
Strand 3	A	641	643	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	286	first strand
Strand 2	A	295	306	anti-parallel
Strand 3	A	424	432	anti-parallel
Strand 4	A	309	310	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	286	first strand
Strand 2	A	295	306	anti-parallel
Strand 3	A	424	432	anti-parallel
Strand 4	A	342	352	anti-parallel
Strand 5	A	405	407	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	411	first strand
Strand 2	A	417	418	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	516	first strand
Strand 2	A	562	567	anti-parallel
Strand 3	A	448	453	anti-parallel
Strand 4	A	586	592	anti-parallel
Strand 5	A	535	538	anti-parallel
Strand 6	A	597	601	parallel
Strand 7	A	626	628	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	694	first strand
Strand 2	A	709	714	anti-parallel
Strand 3	A	717	724	anti-parallel
Strand 4	A	827	831	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	763	764	first strand
Strand 2	A	798	799	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	804	first strand
Strand 2	A	767	769	parallel
Strand 3	A	822	824	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	811	812	first strand
Strand 2	A	815	816	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	906	first strand
Strand 2	A	951	957	anti-parallel
Strand 3	A	849	855	anti-parallel
Strand 4	A	974	984	anti-parallel
Strand 5	A	928	934	anti-parallel
Strand 6	A	989	994	parallel
Strand 7	A	997	1003	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1089	1091	first strand
Strand 2	A	1064	1068	parallel
Strand 3	A	1111	1113	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1203	1205	first strand
Strand 2	A	1231	1233	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1227	1228	first strand
Strand 2	A	1208	1211	anti-parallel
Strand 3	A	1257	1259	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NB3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NB3