Analysis of interatomic Contacts of Structural Units in PDB entry:
9NB5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NB5 entry

There are 3 chains in PDB entry 9NB5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 154	ASP 1030
B	GLY 154	ASP 1030
C	GLY 154	ASP 1030

There are 43 helices in PDB entry 9NB5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	189	200	Right-handed alpha
Helix 2	AA2	A	296	308	Right-handed alpha
Helix 3	AA3	A	403	415	Right-handed alpha
Helix 4	AA4	A	448	452	Right-handed 310
Helix 5	AA5	A	508	519	Right-handed alpha
Helix 6	AA6	A	568	572	Right-handed 310
Helix 7	AA7	A	613	624	Right-handed alpha
Helix 8	AA8	A	658	662	Right-handed 310
Helix 9	AA9	A	749	760	Right-handed alpha
Helix 10	AB1	A	856	868	Right-handed alpha
Helix 11	AB2	A	901	905	Right-handed 310
Helix 12	AB3	A	959	970	Right-handed alpha
Helix 13	AB4	B	189	200	Right-handed alpha
Helix 14	AB5	B	296	308	Right-handed alpha
Helix 15	AB6	B	341	345	Right-handed 310
Helix 16	AB7	B	403	415	Right-handed alpha
Helix 17	AB8	B	448	452	Right-handed 310
Helix 18	AB9	B	508	519	Right-handed alpha
Helix 19	AC1	B	568	572	Right-handed 310
Helix 20	AC2	B	613	624	Right-handed alpha
Helix 21	AC3	B	749	760	Right-handed alpha
Helix 22	AC4	B	794	798	Right-handed 310
Helix 23	AC5	B	856	868	Right-handed alpha
Helix 24	AC6	B	901	905	Right-handed 310
Helix 25	AC7	B	959	970	Right-handed alpha
Helix 26	AC8	B	1019	1023	Right-handed 310
Helix 27	AC9	C	189	200	Right-handed alpha
Helix 28	AD1	C	234	238	Right-handed 310
Helix 29	AD2	C	296	308	Right-handed alpha
Helix 30	AD3	C	403	415	Right-handed alpha
Helix 31	AD4	C	448	452	Right-handed 310
Helix 32	AD5	C	474	476	Right-handed 310
Helix 33	AD6	C	508	519	Right-handed alpha
Helix 34	AD7	C	553	557	Right-handed 310
Helix 35	AD8	C	568	572	Right-handed 310
Helix 36	AD9	C	613	624	Right-handed alpha
Helix 37	AE1	C	658	662	Right-handed 310
Helix 38	AE2	C	749	761	Right-handed alpha
Helix 39	AE3	C	856	868	Right-handed alpha
Helix 40	AE4	C	901	905	Right-handed 310
Helix 41	AE5	C	916	920	Right-handed 310
Helix 42	AE6	C	959	971	Right-handed alpha
Helix 43	AE7	C	1019	1023	Right-handed 310

There are 52 sheets in PDB entry 9NB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	169	176	anti-parallel
Strand 3	A	179	182	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	169	176	anti-parallel
Strand 3	A	255	258	anti-parallel
Strand 4	A	205	209	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	A	276	283	anti-parallel
Strand 3	A	362	366	anti-parallel
Strand 4	A	313	319	anti-parallel
Strand 5	A	456	458	parallel
Strand 6	A	435	438	anti-parallel
Strand 7	A	393	397	parallel
Strand 8	A	383	390	anti-parallel
Strand 9	A	372	380	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	A	286	290	parallel
Strand 3	A	276	283	anti-parallel
Strand 4	A	362	366	anti-parallel
Strand 5	A	313	319	anti-parallel
Strand 6	A	456	458	parallel
Strand 7	A	435	438	anti-parallel
Strand 8	A	393	397	parallel
Strand 9	A	383	390	anti-parallel
Strand 10	A	469	472	anti-parallel
Strand 11	A	419	421	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	481	first strand
Strand 2	A	488	495	anti-parallel
Strand 3	A	574	577	anti-parallel
Strand 4	A	524	528	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	481	first strand
Strand 2	A	488	495	anti-parallel
Strand 3	A	499	501	anti-parallel
Strand 4	A	539	540	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	545	first strand
Strand 2	A	559	560	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	594	600	anti-parallel
Strand 3	A	603	606	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	594	600	anti-parallel
Strand 3	A	679	682	anti-parallel
Strand 4	A	629	631	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	650	first strand
Strand 2	A	664	665	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	726	first strand
Strand 2	A	729	736	anti-parallel
Strand 3	A	815	818	anti-parallel
Strand 4	A	765	769	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	726	first strand
Strand 2	A	729	736	anti-parallel
Strand 3	A	739	743	anti-parallel
Strand 4	A	781	783	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	827	first strand
Strand 2	A	836	843	anti-parallel
Strand 3	A	922	925	anti-parallel
Strand 4	A	873	874	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	827	first strand
Strand 2	A	836	843	anti-parallel
Strand 3	A	846	850	anti-parallel
Strand 4	A	888	890	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	929	932	first strand
Strand 2	A	939	946	anti-parallel
Strand 3	A	1025	1028	anti-parallel
Strand 4	A	975	977	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	929	932	first strand
Strand 2	A	939	946	anti-parallel
Strand 3	A	949	953	anti-parallel
Strand 4	A	991	994	parallel
Strand 5	A	1011	1012	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	169	176	anti-parallel
Strand 3	B	179	181	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	169	176	anti-parallel
Strand 3	B	256	257	anti-parallel
Strand 4	B	207	208	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	269	first strand
Strand 2	B	276	283	anti-parallel
Strand 3	B	362	366	anti-parallel
Strand 4	B	313	316	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	269	first strand
Strand 2	B	276	283	anti-parallel
Strand 3	B	286	290	anti-parallel
Strand 4	B	328	330	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	380	first strand
Strand 2	B	383	390	anti-parallel
Strand 3	B	469	472	anti-parallel
Strand 4	B	419	421	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	380	first strand
Strand 2	B	383	390	anti-parallel
Strand 3	B	394	397	anti-parallel
Strand 4	B	436	438	parallel
Strand 5	B	456	457	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	481	first strand
Strand 2	B	488	495	anti-parallel
Strand 3	B	574	577	anti-parallel
Strand 4	B	524	528	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	481	first strand
Strand 2	B	488	495	anti-parallel
Strand 3	B	498	502	anti-parallel
Strand 4	B	540	541	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	545	first strand
Strand 2	B	559	561	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	586	first strand
Strand 2	B	593	600	anti-parallel
Strand 3	B	679	682	anti-parallel
Strand 4	B	629	631	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	586	first strand
Strand 2	B	593	600	anti-parallel
Strand 3	B	603	607	anti-parallel
Strand 4	B	645	646	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	649	650	first strand
Strand 2	B	664	665	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	726	first strand
Strand 2	B	729	735	anti-parallel
Strand 3	B	815	818	anti-parallel
Strand 4	B	765	769	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	726	first strand
Strand 2	B	729	735	anti-parallel
Strand 3	B	740	743	anti-parallel
Strand 4	B	781	783	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	823	827	first strand
Strand 2	B	836	843	anti-parallel
Strand 3	B	922	925	anti-parallel
Strand 4	B	873	875	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	823	827	first strand
Strand 2	B	836	843	anti-parallel
Strand 3	B	846	850	anti-parallel
Strand 4	B	888	890	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	929	932	first strand
Strand 2	B	939	946	anti-parallel
Strand 3	B	1025	1028	anti-parallel
Strand 4	B	975	979	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	929	932	first strand
Strand 2	B	939	946	anti-parallel
Strand 3	B	949	953	anti-parallel
Strand 4	B	991	993	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	169	176	anti-parallel
Strand 3	C	179	182	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	169	176	anti-parallel
Strand 3	C	255	258	anti-parallel
Strand 4	C	205	209	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	269	first strand
Strand 2	C	276	283	anti-parallel
Strand 3	C	362	366	anti-parallel
Strand 4	C	313	316	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	269	first strand
Strand 2	C	276	283	anti-parallel
Strand 3	C	286	290	anti-parallel
Strand 4	C	328	330	parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	376	first strand
Strand 2	C	383	390	anti-parallel
Strand 3	C	469	472	anti-parallel
Strand 4	C	419	421	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	376	first strand
Strand 2	C	383	390	anti-parallel
Strand 3	C	393	397	anti-parallel
Strand 4	C	436	438	parallel
Strand 5	C	456	457	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	481	first strand
Strand 2	C	488	494	anti-parallel
Strand 3	C	574	577	anti-parallel
Strand 4	C	524	528	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	481	first strand
Strand 2	C	488	494	anti-parallel
Strand 3	C	499	502	anti-parallel
Strand 4	C	539	541	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	544	545	first strand
Strand 2	C	559	560	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	583	586	first strand
Strand 2	C	593	600	anti-parallel
Strand 3	C	679	682	anti-parallel
Strand 4	C	629	631	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	583	586	first strand
Strand 2	C	593	600	anti-parallel
Strand 3	C	603	607	anti-parallel
Strand 4	C	645	646	parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	649	650	first strand
Strand 2	C	664	665	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	719	726	first strand
Strand 2	C	729	736	anti-parallel
Strand 3	C	815	818	anti-parallel
Strand 4	C	765	767	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	719	726	first strand
Strand 2	C	729	736	anti-parallel
Strand 3	C	739	743	anti-parallel
Strand 4	C	781	783	parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	824	827	first strand
Strand 2	C	836	843	anti-parallel
Strand 3	C	922	925	anti-parallel
Strand 4	C	873	875	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	824	827	first strand
Strand 2	C	836	843	anti-parallel
Strand 3	C	846	850	anti-parallel
Strand 4	C	888	890	parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	929	932	first strand
Strand 2	C	939	946	anti-parallel
Strand 3	C	1025	1028	anti-parallel
Strand 4	C	975	979	anti-parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	929	932	first strand
Strand 2	C	939	946	anti-parallel
Strand 3	C	949	953	anti-parallel
Strand 4	C	991	994	parallel
Strand 5	C	1011	1012	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NB5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NB5