Analysis of interatomic Contacts of Structural Units in PDB entry:
9NB8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NB8 entry

There are 6 chains in PDB entry 9NB8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 156	ASP 1030
B	ASP 263	ASP 1030
C	ASP 263	ASP 1030
D	VAL 2	ARG 142
E	HIS 3	TYR 146
F	VAL 89	ASN 347

There are 59 helices in PDB entry 9NB8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	189	201	Right-handed alpha
Helix 2	AA2	A	259	263	Right-handed alpha
Helix 3	AA3	A	296	308	Right-handed alpha
Helix 4	AA4	A	341	346	Right-handed 310
Helix 5	AA5	A	403	414	Right-handed alpha
Helix 6	AA6	A	448	452	Right-handed 310
Helix 7	AA7	A	474	476	Right-handed 310
Helix 8	AA8	A	508	519	Right-handed alpha
Helix 9	AA9	A	613	624	Right-handed alpha
Helix 10	AB1	A	658	662	Right-handed 310
Helix 11	AB2	A	749	760	Right-handed alpha
Helix 12	AB3	A	794	798	Right-handed 310
Helix 13	AB4	A	856	868	Right-handed alpha
Helix 14	AB5	A	901	905	Right-handed 310
Helix 15	AB6	A	959	971	Right-handed alpha
Helix 16	AB7	B	296	308	Right-handed alpha
Helix 17	AB8	B	403	414	Right-handed alpha
Helix 18	AB9	B	508	519	Right-handed alpha
Helix 19	AC1	B	568	572	Right-handed 310
Helix 20	AC2	B	613	625	Right-handed alpha
Helix 21	AC3	B	749	760	Right-handed alpha
Helix 22	AC4	B	856	868	Right-handed alpha
Helix 23	AC5	B	901	905	Right-handed 310
Helix 24	AC6	B	959	971	Right-handed alpha
Helix 25	AC7	B	1004	1008	Right-handed 310
Helix 26	AC8	B	1019	1023	Right-handed 310
Helix 27	AC9	C	296	308	Right-handed alpha
Helix 28	AD1	C	356	360	Right-handed 310
Helix 29	AD2	C	403	414	Right-handed alpha
Helix 30	AD3	C	508	519	Right-handed alpha
Helix 31	AD4	C	553	557	Right-handed 310
Helix 32	AD5	C	613	624	Right-handed alpha
Helix 33	AD6	C	658	662	Right-handed 310
Helix 34	AD7	C	749	760	Right-handed alpha
Helix 35	AD8	C	856	868	Right-handed alpha
Helix 36	AD9	C	901	905	Right-handed 310
Helix 37	AE1	C	959	971	Right-handed alpha
Helix 38	AE2	C	1019	1023	Right-handed 310
Helix 39	AE3	D	4	19	Right-handed alpha
Helix 40	AE4	D	21	37	Right-handed alpha
Helix 41	AE5	D	38	44	Right-handed 310
Helix 42	AE6	D	53	73	Right-handed alpha
Helix 43	AE7	D	76	81	Right-handed alpha
Helix 44	AE8	D	81	91	Right-handed alpha
Helix 45	AE9	D	96	114	Right-handed alpha
Helix 46	AF1	D	119	138	Right-handed alpha
Helix 47	AF2	E	5	19	Right-handed alpha
Helix 48	AF3	E	20	36	Right-handed alpha
Helix 49	AF4	E	37	42	Right-handed 310
Helix 50	AF5	E	43	47	Right-handed 310
Helix 51	AF6	E	51	58	Right-handed alpha
Helix 52	AF7	E	58	78	Right-handed alpha
Helix 53	AF8	E	82	97	Right-handed alpha
Helix 54	AF9	E	100	120	Right-handed alpha
Helix 55	AG1	E	124	146	Right-handed alpha
Helix 56	AG2	F	141	147	Right-handed alpha
Helix 57	AG3	F	154	162	Right-handed alpha
Helix 58	AG4	F	246	256	Right-handed alpha
Helix 59	AG5	F	333	347	Right-handed alpha

There are 49 sheets in PDB entry 9NB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	170	176	anti-parallel
Strand 3	A	179	182	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	170	176	anti-parallel
Strand 3	A	255	258	anti-parallel
Strand 4	A	205	207	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	269	first strand
Strand 2	A	276	283	anti-parallel
Strand 3	A	286	288	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	269	first strand
Strand 2	A	276	283	anti-parallel
Strand 3	A	362	366	anti-parallel
Strand 4	A	313	316	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	376	first strand
Strand 2	A	383	389	anti-parallel
Strand 3	A	469	472	anti-parallel
Strand 4	A	419	421	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	376	first strand
Strand 2	A	383	389	anti-parallel
Strand 3	A	394	397	anti-parallel
Strand 4	A	436	438	parallel
Strand 5	A	456	457	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	481	first strand
Strand 2	A	488	494	anti-parallel
Strand 3	A	574	577	anti-parallel
Strand 4	A	524	528	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	545	first strand
Strand 2	A	559	560	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	594	600	anti-parallel
Strand 3	A	603	607	anti-parallel
Strand 4	A	645	646	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	594	600	anti-parallel
Strand 3	A	679	680	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	650	first strand
Strand 2	A	664	665	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	722	first strand
Strand 2	A	729	736	anti-parallel
Strand 3	A	739	742	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	722	first strand
Strand 2	A	729	736	anti-parallel
Strand 3	A	815	818	anti-parallel
Strand 4	A	765	769	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	827	first strand
Strand 2	A	836	843	anti-parallel
Strand 3	A	922	925	anti-parallel
Strand 4	A	873	876	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	827	first strand
Strand 2	A	836	843	anti-parallel
Strand 3	A	846	850	anti-parallel
Strand 4	A	888	890	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	929	932	first strand
Strand 2	A	941	945	anti-parallel
Strand 3	A	950	951	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	975	978	first strand
Strand 2	A	1026	1028	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	269	first strand
Strand 2	B	278	283	anti-parallel
Strand 3	B	286	290	anti-parallel
Strand 4	B	328	330	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	315	first strand
Strand 2	B	364	366	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	377	first strand
Strand 2	B	383	389	anti-parallel
Strand 3	B	469	472	anti-parallel
Strand 4	B	419	421	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	397	first strand
Strand 2	B	436	439	parallel
Strand 3	B	455	457	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	481	first strand
Strand 2	B	488	491	anti-parallel
Strand 3	B	574	577	anti-parallel
Strand 4	B	524	528	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	495	first strand
Strand 2	B	498	499	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	502	first strand
Strand 2	B	540	541	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	545	first strand
Strand 2	B	559	561	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	586	first strand
Strand 2	B	593	600	anti-parallel
Strand 3	B	603	606	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	586	first strand
Strand 2	B	593	600	anti-parallel
Strand 3	B	679	681	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	649	650	first strand
Strand 2	B	664	665	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	729	736	anti-parallel
Strand 3	B	739	742	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	729	736	anti-parallel
Strand 3	B	815	818	anti-parallel
Strand 4	B	765	767	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	822	827	first strand
Strand 2	B	836	843	anti-parallel
Strand 3	B	846	849	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	822	827	first strand
Strand 2	B	836	843	anti-parallel
Strand 3	B	923	925	anti-parallel
Strand 4	B	873	875	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	929	932	first strand
Strand 2	B	939	946	anti-parallel
Strand 3	B	1025	1028	anti-parallel
Strand 4	B	975	979	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	929	932	first strand
Strand 2	B	939	946	anti-parallel
Strand 3	B	949	953	anti-parallel
Strand 4	B	991	993	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	268	first strand
Strand 2	C	279	283	anti-parallel
Strand 3	C	286	289	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	316	first strand
Strand 2	C	363	366	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	376	first strand
Strand 2	C	384	390	anti-parallel
Strand 3	C	393	397	anti-parallel
Strand 4	C	436	439	parallel
Strand 5	C	455	457	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	376	first strand
Strand 2	C	384	390	anti-parallel
Strand 3	C	469	470	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	481	first strand
Strand 2	C	488	495	anti-parallel
Strand 3	C	574	577	anti-parallel
Strand 4	C	524	528	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	481	first strand
Strand 2	C	488	495	anti-parallel
Strand 3	C	498	502	anti-parallel
Strand 4	C	540	541	parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	583	586	first strand
Strand 2	C	595	600	anti-parallel
Strand 3	C	603	605	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	720	722	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	739	743	anti-parallel
Strand 4	C	781	783	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	765	769	first strand
Strand 2	C	815	818	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	824	827	first strand
Strand 2	C	836	842	anti-parallel
Strand 3	C	922	925	anti-parallel
Strand 4	C	873	875	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	824	827	first strand
Strand 2	C	836	842	anti-parallel
Strand 3	C	847	850	anti-parallel
Strand 4	C	888	890	parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	929	932	first strand
Strand 2	C	940	946	anti-parallel
Strand 3	C	949	951	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	929	932	first strand
Strand 2	C	940	946	anti-parallel
Strand 3	C	1025	1028	anti-parallel
Strand 4	C	975	979	anti-parallel

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There are 7 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	108	first strand
Strand 2	F	238	243	anti-parallel
Strand 3	F	219	224	anti-parallel
Strand 4	F	299	304	anti-parallel
Strand 5	F	309	316	anti-parallel
Strand 6	F	328	331	anti-parallel
Strand 7	F	279	282	anti-parallel

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There are 7 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	171	first strand
Strand 2	F	163	166	anti-parallel
Strand 3	F	117	121	anti-parallel
Strand 4	F	127	132	anti-parallel
Strand 5	F	137	140	anti-parallel
Strand 6	F	189	193	anti-parallel
Strand 7	F	174	179	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NB8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NB8