Analysis of interatomic Contacts of Structural Units in PDB entry:
9NBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NBL entry

There is 1 chain in PDB entry 9NBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2THR 587
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9NBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
21 36Right-handed alpha
Helix 3
AA3
A
50 56Right-handed alpha
Helix 4
AA4
A
78 92Right-handed alpha
Helix 5
AA5
A
99 110Right-handed alpha
Helix 6
AA6
A
112 130Right-handed alpha
Helix 7
AA7
A
130 135Right-handed alpha
Helix 8
AA8
A
147 155Right-handed alpha
Helix 9
AA9
A
174 180Right-handed 310
Helix 10
AB1
A
183 196Right-handed alpha
Helix 11
AB2
A
209 227Right-handed alpha
Helix 12
AB3
A
240 245Right-handed 310
Helix 13
AB4
A
247 263Right-handed alpha
Helix 14
AB5
A
264 269Right-handed 310
Helix 15
AB6
A
285 290Right-handed alpha
Helix 16
AB7
A
314 325Right-handed alpha
Helix 17
AB8
A
339 354Right-handed alpha
Helix 18
AB9
A
386 402Right-handed alpha
Helix 19
AC1
A
407 418Right-handed alpha
Helix 20
AC2
A
420 439Right-handed alpha
Helix 21
AC3
A
451 461Right-handed alpha
Helix 22
AC4
A
482 488Right-handed alpha
Helix 23
AC5
A
501 519Right-handed alpha
Helix 24
AC6
A
531 535Right-handed 310
Helix 25
AC7
A
538 558Right-handed alpha
Helix 26
AC8
A
575 584Right-handed alpha
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There are 4 sheets in PDB entry 9NBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
202 206parallel
Strand 3
A
231 238parallel
Strand 4
A
273 277parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
72 76parallel
Strand 3
A
64 65anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
329 333parallel
Strand 3
A
492 498parallel
Strand 4
A
525 530parallel
Strand 5
A
563 567parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
383 384parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il