Analysis of interatomic Contacts of Structural Units in PDB entry:
9NBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NBM entry

There is 1 chain in PDB entry 9NBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2PRO 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9NBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 37Right-handed alpha
Helix 2
AA2
A
50 56Right-handed alpha
Helix 3
AA3
A
78 92Right-handed alpha
Helix 4
AA4
A
99 110Right-handed alpha
Helix 5
AA5
A
112 128Right-handed alpha
Helix 6
AA6
A
132 137Right-handed alpha
Helix 7
AA7
A
147 156Right-handed alpha
Helix 8
AA8
A
175 180Right-handed 310
Helix 9
AA9
A
183 196Right-handed alpha
Helix 10
AB1
A
209 227Right-handed alpha
Helix 11
AB2
A
240 245Right-handed 310
Helix 12
AB3
A
247 263Right-handed alpha
Helix 13
AB4
A
265 269Right-handed 310
Helix 14
AB5
A
285 291Right-handed alpha
Helix 15
AB6
A
314 325Right-handed alpha
Helix 16
AB7
A
339 354Right-handed alpha
Helix 17
AB8
A
372 377Right-handed alpha
Helix 18
AB9
A
386 400Right-handed alpha
Helix 19
AC1
A
407 418Right-handed alpha
Helix 20
AC2
A
420 439Right-handed alpha
Helix 21
AC3
A
451 463Right-handed alpha
Helix 22
AC4
A
482 488Right-handed alpha
Helix 23
AC5
A
501 519Right-handed alpha
Helix 24
AC6
A
538 559Right-handed alpha
Helix 25
AC7
A
579 584Right-handed alpha
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There are 5 sheets in PDB entry 9NBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
139 142parallel
Strand 3
A
40 44parallel
Strand 4
A
72 76parallel
Strand 5
A
64 65anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
202 206parallel
Strand 3
A
231 238parallel
Strand 4
A
273 277parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
329 330parallel
Strand 3
A
492 493parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
381 382parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 499first strand
Strand 2
A
524 530parallel
Strand 3
A
563 567parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il