Analysis of interatomic Contacts of Structural Units in PDB entry:
9NBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NBO entry

There is 1 chain in PDB entry 9NBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2PRO 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 9NBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 36Right-handed alpha
Helix 2
AA2
A
50 56Right-handed alpha
Helix 3
AA3
A
78 92Right-handed alpha
Helix 4
AA4
A
93 95Right-handed 310
Helix 5
AA5
A
99 110Right-handed alpha
Helix 6
AA6
A
112 130Right-handed alpha
Helix 7
AA7
A
146 166Right-handed alpha
Helix 8
AA8
A
179 182Right-handed 310
Helix 9
AA9
A
183 195Right-handed alpha
Helix 10
AB1
A
209 227Right-handed alpha
Helix 11
AB2
A
240 244Right-handed 310
Helix 12
AB3
A
247 263Right-handed alpha
Helix 13
AB4
A
285 290Right-handed alpha
Helix 14
AB5
A
314 326Right-handed alpha
Helix 15
AB6
A
339 354Right-handed alpha
Helix 16
AB7
A
368 372Right-handed 310
Helix 17
AB8
A
386 403Right-handed alpha
Helix 18
AB9
A
407 419Right-handed alpha
Helix 19
AC1
A
421 437Right-handed alpha
Helix 20
AC2
A
450 459Right-handed alpha
Helix 21
AC3
A
462 472Right-handed alpha
Helix 22
AC4
A
481 487Right-handed alpha
Helix 23
AC5
A
501 518Right-handed alpha
Helix 24
AC6
A
538 558Right-handed alpha
Helix 25
AC7
A
574 582Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9NBO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
72 76anti-parallel
Strand 3
A
40 44parallel
Strand 4
A
139 143parallel
Strand 5
A
11 16parallel
Strand 6
A
200 207parallel
Strand 7
A
232 238parallel
Strand 8
A
273 277parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 382first strand
Strand 2
A
358 362parallel
Strand 3
A
443 447parallel
Strand 4
A
328 334parallel
Strand 5
A
492 499parallel
Strand 6
A
524 530parallel
Strand 7
A
563 567parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il