Analysis of interatomic Contacts of Structural Units in PDB entry:
9NDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NDT entry

There are 2 chains in PDB entry 9NDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 17TYR 891
B
 ASN 38TYR 882
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 9NDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 36Right-handed alpha
Helix 2
AA2
A
67 78Right-handed alpha
Helix 3
AA3
A
129 134Right-handed alpha
Helix 4
AA4
A
222 226Right-handed 310
Helix 5
AA5
A
227 235Right-handed alpha
Helix 6
AA6
A
238 251Right-handed alpha
Helix 7
AA7
A
251 257Right-handed alpha
Helix 8
AA8
A
258 262Right-handed 310
Helix 9
AA9
A
264 274Right-handed alpha
Helix 10
AB1
A
293 303Right-handed alpha
Helix 11
AB2
A
304 308Right-handed 310
Helix 12
AB3
A
309 344Right-handed alpha
Helix 13
AB4
A
347 362Right-handed alpha
Helix 14
AB5
A
364 376Right-handed alpha
Helix 15
AB6
A
391 399Right-handed alpha
Helix 16
AB7
A
400 408Right-handed alpha
Helix 17
AB8
A
410 418Right-handed alpha
Helix 18
AB9
A
641 661Right-handed alpha
Helix 19
AC1
A
779 794Right-handed alpha
Helix 20
AC2
A
794 802Right-handed alpha
Helix 21
AC3
A
803 805Right-handed 310
Helix 22
AC4
B
40 45Right-handed alpha
Helix 23
AC5
B
45 58Right-handed alpha
Helix 24
AC6
B
67 77Right-handed alpha
Helix 25
AC7
B
79 83Right-handed 310
Helix 26
AC8
B
102 114Right-handed alpha
Helix 27
AC9
B
122 135Right-handed alpha
Helix 28
AD1
B
145 150Right-handed alpha
Helix 29
AD2
B
152 156Right-handed 310
Helix 30
AD3
B
173 185Right-handed alpha
Helix 31
AD4
B
185 198Right-handed alpha
Helix 32
AD5
B
238 242Right-handed 310
Helix 33
AD6
B
251 254Right-handed 310
Helix 34
AD7
B
255 273Right-handed alpha
Helix 35
AD8
B
275 280Right-handed alpha
Helix 36
AD9
B
316 324Right-handed alpha
Helix 37
AE1
B
324 331Right-handed alpha
Helix 38
AE2
B
866 875Right-handed alpha
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There are 2 sheets in PDB entry 9NDT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 421first strand
Strand 2
A
886 888anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
116 120parallel
Strand 3
B
245 249parallel
Strand 4
B
285 289parallel
Strand 5
B
91 97parallel
Strand 6
B
337 340parallel
Strand 7
B
879 881parallel
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