Analysis of interatomic Contacts of Structural Units in PDB entry:
9NE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NE5 entry

There is 1 chain in PDB entry 9NE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 58GLY 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9NE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
74 88Right-handed alpha
Helix 2
AA2
B
112 129Right-handed alpha
Helix 3
AA3
B
138 142Right-handed 310
Helix 4
AA4
B
147 164Right-handed alpha
Helix 5
AA5
B
181 186Right-handed alpha
Helix 6
AA6
B
190 206Right-handed alpha
Helix 7
AA7
B
220 224Right-handed 310
Helix 8
AA8
B
231 241Right-handed alpha
Helix 9
AA9
B
260 272Right-handed alpha
Helix 10
AB1
B
302 307Right-handed alpha
Helix 11
AB2
B
317 320Right-handed 310
Helix 12
AB3
B
321 334Right-handed alpha
Helix 13
AB4
B
375 389Right-handed alpha
Helix 14
AB5
B
390 392Right-handed 310
Helix 15
AB6
B
554 565Right-handed alpha
Helix 16
AB7
B
572 588Right-handed alpha
Helix 17
AB8
B
589 592Right-handed 310
Helix 18
AB9
B
600 629Right-handed alpha
Helix 19
AC1
B
634 639Right-handed alpha
Helix 20
AC2
B
640 663Right-handed alpha
Helix 21
AC3
B
677 682Right-handed 310
Helix 22
AC4
B
683 692Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9NE5.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 66first strand
Strand 2
B
92 95parallel
Strand 3
B
132 137parallel
Strand 4
B
168 172parallel
Strand 5
B
212 215parallel
Strand 6
B
246 249parallel
Strand 7
B
276 279parallel
Strand 8
B
309 312parallel
Strand 9
B
61 66parallel
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