Analysis of interatomic Contacts of Structural Units in PDB entry:
9NE7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NE7 entry

There are 6 chains in PDB entry 9NE7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 29	MET 1197
B	MET 1	SER 261
C	MET 1	SER 261
D	MET 1	SER 261
P	G 14	T 33
T	T 14	C 34

There are 54 helices in PDB entry 9NE7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	47	Right-handed alpha
Helix 2	AA2	A	112	122	Right-handed alpha
Helix 3	AA3	A	159	181	Right-handed alpha
Helix 4	AA4	A	214	216	Right-handed 310
Helix 5	AA5	A	227	236	Right-handed alpha
Helix 6	AA6	A	339	355	Right-handed alpha
Helix 7	AA7	A	368	379	Right-handed alpha
Helix 8	AA8	A	407	414	Right-handed alpha
Helix 9	AA9	A	418	422	Right-handed 310
Helix 10	AB1	A	425	431	Right-handed alpha
Helix 11	AB2	A	440	451	Right-handed alpha
Helix 12	AB3	A	452	473	Right-handed alpha
Helix 13	AB4	A	473	482	Right-handed alpha
Helix 14	AB5	A	488	495	Right-handed alpha
Helix 15	AB6	A	496	512	Right-handed alpha
Helix 16	AB7	A	563	572	Right-handed alpha
Helix 17	AB8	A	573	585	Right-handed alpha
Helix 18	AB9	A	589	593	Right-handed 310
Helix 19	AC1	A	595	612	Right-handed alpha
Helix 20	AC2	A	629	638	Right-handed alpha
Helix 21	AC3	A	647	652	Right-handed alpha
Helix 22	AC4	A	679	690	Right-handed alpha
Helix 23	AC5	A	711	731	Right-handed alpha
Helix 24	AC6	A	753	786	Right-handed alpha
Helix 25	AC7	A	787	820	Right-handed alpha
Helix 26	AC8	A	828	854	Right-handed alpha
Helix 27	AC9	A	892	905	Right-handed alpha
Helix 28	AD1	A	982	993	Right-handed alpha
Helix 29	AD2	A	998	1019	Right-handed alpha
Helix 30	AD3	A	1028	1034	Right-handed alpha
Helix 31	AD4	A	1052	1062	Right-handed alpha
Helix 32	AD5	A	1065	1069	Right-handed 310
Helix 33	AD6	A	1102	1114	Right-handed alpha
Helix 34	AD7	A	1123	1128	Right-handed alpha
Helix 35	AD8	A	1129	1145	Right-handed alpha
Helix 36	AD9	A	1145	1152	Right-handed alpha
Helix 37	AE1	A	1164	1176	Right-handed alpha
Helix 38	AE2	B	9	19	Right-handed alpha
Helix 39	AE3	B	71	82	Right-handed alpha
Helix 40	AE4	B	141	155	Right-handed alpha
Helix 41	AE5	B	209	217	Right-handed alpha
Helix 42	AE6	B	218	222	Right-handed 310
Helix 43	AE7	C	9	23	Right-handed alpha
Helix 44	AE8	C	55	57	Right-handed 310
Helix 45	AE9	C	71	80	Right-handed alpha
Helix 46	AF1	C	141	153	Right-handed alpha
Helix 47	AF2	C	209	216	Right-handed alpha
Helix 48	AF3	C	217	222	Right-handed 310
Helix 49	AF4	D	9	20	Right-handed alpha
Helix 50	AF5	D	55	57	Right-handed 310
Helix 51	AF6	D	72	80	Right-handed alpha
Helix 52	AF7	D	141	153	Right-handed alpha
Helix 53	AF8	D	208	217	Right-handed alpha
Helix 54	AF9	D	218	222	Right-handed 310

There are 20 sheets in PDB entry 9NE7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	80	87	anti-parallel
Strand 3	A	93	98	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	80	87	anti-parallel
Strand 3	A	59	65	anti-parallel
Strand 4	A	243	247	anti-parallel
Strand 5	A	256	260	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	136	first strand
Strand 2	A	150	156	anti-parallel
Strand 3	A	103	108	anti-parallel
Strand 4	A	218	222	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	278	first strand
Strand 2	A	293	300	anti-parallel
Strand 3	A	303	309	anti-parallel
Strand 4	A	335	337	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	361	first strand
Strand 2	A	403	406	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	397	398	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	539	first strand
Strand 2	A	666	675	anti-parallel
Strand 3	A	736	745	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	546	first strand
Strand 2	A	855	859	anti-parallel
Strand 3	A	863	869	anti-parallel
Strand 4	A	620	626	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	553	first strand
Strand 2	A	939	942	anti-parallel
Strand 3	A	956	959	anti-parallel
Strand 4	A	965	969	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	875	879	first strand
Strand 2	A	887	891	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	911	915	first strand
Strand 2	A	920	923	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1079	1080	first strand
Strand 2	A	1093	1094	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1189	1191	first strand
Strand 2	D	125	126	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	61	first strand
Strand 2	B	3	6	anti-parallel
Strand 3	B	87	91	anti-parallel
Strand 4	B	98	104	anti-parallel
Strand 5	B	110	117	anti-parallel
Strand 6	C	176	183	anti-parallel
Strand 7	C	166	172	anti-parallel
Strand 8	C	157	163	anti-parallel
Strand 9	C	205	208	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	28	31	anti-parallel
Strand 3	B	34	40	anti-parallel
Strand 4	B	46	53	anti-parallel
Strand 5	B	245	251	anti-parallel
Strand 6	B	238	241	anti-parallel
Strand 7	B	224	229	anti-parallel
Strand 8	B	135	140	anti-parallel
Strand 9	B	196	199	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	208	first strand
Strand 2	B	157	163	anti-parallel
Strand 3	B	166	172	anti-parallel
Strand 4	B	176	182	anti-parallel
Strand 5	D	110	117	anti-parallel
Strand 6	D	98	104	anti-parallel
Strand 7	D	87	92	anti-parallel
Strand 8	D	2	6	anti-parallel
Strand 9	D	60	62	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	2	5	anti-parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	98	104	anti-parallel
Strand 5	C	110	117	anti-parallel
Strand 6	D	176	182	anti-parallel
Strand 7	D	167	173	anti-parallel
Strand 8	D	157	162	anti-parallel
Strand 9	D	204	207	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	28	31	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	46	53	anti-parallel
Strand 5	C	245	251	anti-parallel
Strand 6	C	235	239	anti-parallel
Strand 7	C	224	229	anti-parallel
Strand 8	C	135	140	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	25	30	anti-parallel
Strand 3	D	34	37	anti-parallel
Strand 4	D	46	53	anti-parallel
Strand 5	D	245	251	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	198	first strand
Strand 2	D	135	140	anti-parallel
Strand 3	D	224	229	anti-parallel
Strand 4	D	236	238	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NE7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NE7