Analysis of interatomic Contacts of Structural Units in PDB entry:
9NE8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NE8 entry

There are 6 chains in PDB entry 9NE8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 29	MET 1197
B	MET 1	SER 261
C	MET 1	SER 261
D	MET 1	SER 261
P	A 12	T 33
T	G 13	T 36

There are 60 helices in PDB entry 9NE8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	48	Right-handed alpha
Helix 2	AA2	A	113	121	Right-handed alpha
Helix 3	AA3	A	159	181	Right-handed alpha
Helix 4	AA4	A	213	216	Right-handed 310
Helix 5	AA5	A	227	236	Right-handed alpha
Helix 6	AA6	A	309	313	Right-handed 310
Helix 7	AA7	A	339	355	Right-handed alpha
Helix 8	AA8	A	367	379	Right-handed alpha
Helix 9	AA9	A	382	387	Right-handed alpha
Helix 10	AB1	A	407	414	Right-handed alpha
Helix 11	AB2	A	418	422	Right-handed 310
Helix 12	AB3	A	423	432	Right-handed alpha
Helix 13	AB4	A	443	451	Right-handed alpha
Helix 14	AB5	A	452	473	Right-handed alpha
Helix 15	AB6	A	473	482	Right-handed alpha
Helix 16	AB7	A	488	493	Right-handed alpha
Helix 17	AB8	A	496	512	Right-handed alpha
Helix 18	AB9	A	563	572	Right-handed alpha
Helix 19	AC1	A	573	584	Right-handed alpha
Helix 20	AC2	A	589	593	Right-handed 310
Helix 21	AC3	A	595	612	Right-handed alpha
Helix 22	AC4	A	629	638	Right-handed alpha
Helix 23	AC5	A	647	654	Right-handed alpha
Helix 24	AC6	A	679	690	Right-handed alpha
Helix 25	AC7	A	706	710	Right-handed 310
Helix 26	AC8	A	711	727	Right-handed alpha
Helix 27	AC9	A	754	786	Right-handed alpha
Helix 28	AD1	A	787	814	Right-handed alpha
Helix 29	AD2	A	814	820	Right-handed alpha
Helix 30	AD3	A	828	854	Right-handed alpha
Helix 31	AD4	A	892	905	Right-handed alpha
Helix 32	AD5	A	971	975	Right-handed 310
Helix 33	AD6	A	980	992	Right-handed alpha
Helix 34	AD7	A	998	1011	Right-handed alpha
Helix 35	AD8	A	1011	1019	Right-handed alpha
Helix 36	AD9	A	1025	1028	Right-handed 310
Helix 37	AE1	A	1029	1034	Right-handed alpha
Helix 38	AE2	A	1042	1047	Right-handed alpha
Helix 39	AE3	A	1051	1062	Right-handed alpha
Helix 40	AE4	A	1065	1069	Right-handed 310
Helix 41	AE5	A	1096	1101	Right-handed 310
Helix 42	AE6	A	1102	1115	Right-handed alpha
Helix 43	AE7	A	1123	1128	Right-handed alpha
Helix 44	AE8	A	1129	1145	Right-handed alpha
Helix 45	AE9	A	1145	1152	Right-handed alpha
Helix 46	AF1	A	1164	1175	Right-handed alpha
Helix 47	AF2	B	9	18	Right-handed alpha
Helix 48	AF3	B	71	77	Right-handed alpha
Helix 49	AF4	B	140	152	Right-handed alpha
Helix 50	AF5	B	209	216	Right-handed alpha
Helix 51	AF6	C	9	18	Right-handed alpha
Helix 52	AF7	C	71	81	Right-handed alpha
Helix 53	AF8	C	141	152	Right-handed alpha
Helix 54	AF9	C	209	216	Right-handed alpha
Helix 55	AG1	D	9	23	Right-handed alpha
Helix 56	AG2	D	55	57	Right-handed 310
Helix 57	AG3	D	72	80	Right-handed alpha
Helix 58	AG4	D	141	152	Right-handed alpha
Helix 59	AG5	D	209	216	Right-handed alpha
Helix 60	AG6	D	217	222	Right-handed 310

There are 17 sheets in PDB entry 9NE8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	93	98	parallel
Strand 3	A	80	87	anti-parallel
Strand 4	A	57	70	anti-parallel
Strand 5	A	243	248	anti-parallel
Strand 6	A	256	260	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	136	first strand
Strand 2	A	150	157	anti-parallel
Strand 3	A	103	108	anti-parallel
Strand 4	A	218	222	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	331	335	anti-parallel
Strand 3	A	303	307	parallel
Strand 4	A	293	300	anti-parallel
Strand 5	A	271	278	anti-parallel
Strand 6	A	358	361	parallel
Strand 7	A	403	406	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	539	first strand
Strand 2	A	664	675	anti-parallel
Strand 3	A	736	747	anti-parallel
Strand 4	A	645	646	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	546	first strand
Strand 2	A	855	860	anti-parallel
Strand 3	A	863	869	anti-parallel
Strand 4	A	620	626	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	553	first strand
Strand 2	A	939	942	anti-parallel
Strand 3	A	956	959	anti-parallel
Strand 4	A	965	969	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	561	first strand
Strand 2	A	615	618	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	875	879	first strand
Strand 2	A	887	891	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	910	915	first strand
Strand 2	A	920	924	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1037	1038	first strand
Strand 2	A	1075	1076	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1079	1080	first strand
Strand 2	A	1093	1094	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	98	104	anti-parallel
Strand 5	B	110	117	anti-parallel
Strand 6	C	176	182	anti-parallel
Strand 7	C	167	173	anti-parallel
Strand 8	C	157	162	anti-parallel
Strand 9	C	203	208	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	70	first strand
Strand 2	B	26	30	anti-parallel
Strand 3	B	34	40	anti-parallel
Strand 4	B	46	53	anti-parallel
Strand 5	B	245	251	anti-parallel
Strand 6	B	233	241	anti-parallel
Strand 7	B	225	230	anti-parallel
Strand 8	B	135	139	anti-parallel
Strand 9	B	196	199	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	208	first strand
Strand 2	B	157	162	anti-parallel
Strand 3	B	166	173	anti-parallel
Strand 4	B	176	183	anti-parallel
Strand 5	D	111	117	anti-parallel
Strand 6	D	98	104	anti-parallel
Strand 7	D	87	92	anti-parallel
Strand 8	D	2	6	anti-parallel
Strand 9	D	59	61	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	98	104	anti-parallel
Strand 5	C	111	117	anti-parallel
Strand 6	D	176	182	anti-parallel
Strand 7	D	166	173	anti-parallel
Strand 8	D	157	163	anti-parallel
Strand 9	D	203	208	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand
Strand 2	C	28	31	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	46	53	anti-parallel
Strand 5	C	247	251	anti-parallel
Strand 6	C	235	238	anti-parallel
Strand 7	C	224	229	anti-parallel
Strand 8	C	135	140	anti-parallel
Strand 9	C	196	198	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	68	first strand
Strand 2	D	28	30	anti-parallel
Strand 3	D	34	37	anti-parallel
Strand 4	D	46	53	anti-parallel
Strand 5	D	245	251	anti-parallel
Strand 6	D	235	241	anti-parallel
Strand 7	D	224	229	anti-parallel
Strand 8	D	135	140	anti-parallel
Strand 9	D	196	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NE8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NE8