Analysis of interatomic Contacts of Structural Units in PDB entry:
9NE9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NE9 entry

There are 6 chains in PDB entry 9NE9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 27	ALA 1198
B	MET 1	SER 261
C	MET 1	SER 261
D	MET 1	SER 261
P	G 4	A 34
T	A 2	C 34

There are 49 helices in PDB entry 9NE9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	47	Right-handed alpha
Helix 2	AA2	A	112	124	Right-handed alpha
Helix 3	AA3	A	143	147	Right-handed 310
Helix 4	AA4	A	159	193	Right-handed alpha
Helix 5	AA5	A	214	216	Right-handed 310
Helix 6	AA6	A	227	237	Right-handed alpha
Helix 7	AA7	A	339	355	Right-handed alpha
Helix 8	AA8	A	367	379	Right-handed alpha
Helix 9	AA9	A	407	414	Right-handed alpha
Helix 10	AB1	A	423	431	Right-handed alpha
Helix 11	AB2	A	443	451	Right-handed alpha
Helix 12	AB3	A	451	472	Right-handed alpha
Helix 13	AB4	A	473	483	Right-handed alpha
Helix 14	AB5	A	488	495	Right-handed alpha
Helix 15	AB6	A	496	512	Right-handed alpha
Helix 16	AB7	A	563	585	Right-handed alpha
Helix 17	AB8	A	595	612	Right-handed alpha
Helix 18	AB9	A	629	639	Right-handed alpha
Helix 19	AC1	A	647	654	Right-handed alpha
Helix 20	AC2	A	680	690	Right-handed alpha
Helix 21	AC3	A	711	727	Right-handed alpha
Helix 22	AC4	A	752	786	Right-handed alpha
Helix 23	AC5	A	787	820	Right-handed alpha
Helix 24	AC6	A	828	851	Right-handed alpha
Helix 25	AC7	A	892	905	Right-handed alpha
Helix 26	AC8	A	980	991	Right-handed alpha
Helix 27	AC9	A	998	1019	Right-handed alpha
Helix 28	AD1	A	1026	1034	Right-handed alpha
Helix 29	AD2	A	1051	1064	Right-handed alpha
Helix 30	AD3	A	1065	1071	Right-handed alpha
Helix 31	AD4	A	1088	1091	Right-handed 310
Helix 32	AD5	A	1097	1101	Right-handed 310
Helix 33	AD6	A	1102	1114	Right-handed alpha
Helix 34	AD7	A	1129	1145	Right-handed alpha
Helix 35	AD8	A	1145	1151	Right-handed alpha
Helix 36	AD9	A	1164	1175	Right-handed alpha
Helix 37	AE1	B	9	20	Right-handed alpha
Helix 38	AE2	B	72	80	Right-handed alpha
Helix 39	AE3	B	141	155	Right-handed alpha
Helix 40	AE4	B	209	217	Right-handed alpha
Helix 41	AE5	C	9	19	Right-handed alpha
Helix 42	AE6	C	75	80	Right-handed alpha
Helix 43	AE7	C	141	149	Right-handed alpha
Helix 44	AE8	C	209	214	Right-handed alpha
Helix 45	AE9	C	218	222	Right-handed 310
Helix 46	AF1	D	9	17	Right-handed alpha
Helix 47	AF2	D	74	78	Right-handed 310
Helix 48	AF3	D	141	151	Right-handed alpha
Helix 49	AF4	D	209	216	Right-handed alpha

There are 17 sheets in PDB entry 9NE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	99	first strand
Strand 2	A	81	87	anti-parallel
Strand 3	A	57	69	anti-parallel
Strand 4	A	243	248	anti-parallel
Strand 5	A	256	259	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	153	157	anti-parallel
Strand 3	A	105	108	anti-parallel
Strand 4	A	218	222	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	337	first strand
Strand 2	A	303	309	parallel
Strand 3	A	293	300	anti-parallel
Strand 4	A	271	278	anti-parallel
Strand 5	A	358	361	parallel
Strand 6	A	403	406	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	538	first strand
Strand 2	A	665	675	anti-parallel
Strand 3	A	736	746	anti-parallel
Strand 4	A	645	646	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	546	first strand
Strand 2	A	858	859	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	553	first strand
Strand 2	A	939	941	anti-parallel
Strand 3	A	956	959	anti-parallel
Strand 4	A	965	969	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	561	first strand
Strand 2	A	615	618	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	625	first strand
Strand 2	A	864	869	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	875	879	first strand
Strand 2	A	887	891	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1035	1037	first strand
Strand 2	A	1076	1080	anti-parallel
Strand 3	A	1093	1095	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1179	1180	first strand
Strand 2	D	254	255	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	98	104	anti-parallel
Strand 5	B	110	117	anti-parallel
Strand 6	C	176	182	anti-parallel
Strand 7	C	167	173	anti-parallel
Strand 8	C	157	162	anti-parallel
Strand 9	C	203	208	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	28	31	anti-parallel
Strand 3	B	34	40	anti-parallel
Strand 4	B	47	52	anti-parallel
Strand 5	B	245	251	anti-parallel
Strand 6	B	235	240	anti-parallel
Strand 7	B	224	229	anti-parallel
Strand 8	B	135	140	anti-parallel
Strand 9	B	196	198	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	208	first strand
Strand 2	B	157	162	anti-parallel
Strand 3	B	166	171	anti-parallel
Strand 4	B	177	183	anti-parallel
Strand 5	D	111	117	anti-parallel
Strand 6	D	98	104	anti-parallel
Strand 7	D	87	92	anti-parallel
Strand 8	D	2	6	anti-parallel
Strand 9	D	60	61	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand
Strand 2	C	28	31	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	47	53	anti-parallel
Strand 5	C	245	249	anti-parallel
Strand 6	C	236	241	anti-parallel
Strand 7	C	224	229	anti-parallel
Strand 8	C	135	140	anti-parallel
Strand 9	C	196	198	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	104	first strand
Strand 2	C	110	117	anti-parallel
Strand 3	D	178	182	anti-parallel
Strand 4	D	167	172	anti-parallel
Strand 5	D	157	162	anti-parallel
Strand 6	D	203	208	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	68	first strand
Strand 2	D	28	31	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	46	52	anti-parallel
Strand 5	D	245	251	anti-parallel
Strand 6	D	235	241	anti-parallel
Strand 7	D	224	228	anti-parallel
Strand 8	D	137	140	anti-parallel
Strand 9	D	196	197	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NE9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NE9