Analysis of interatomic Contacts of Structural Units in PDB entry:
9NEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NEB entry

There are 2 chains in PDB entry 9NEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 409ASP 890
C
 ASP 5ALA 750
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 9NEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
409 418Right-handed alpha
Helix 2
AA2
A
427 438Right-handed alpha
Helix 3
AA3
A
440 445Right-handed alpha
Helix 4
AA4
A
457 471Right-handed alpha
Helix 5
AA5
A
505 510Right-handed alpha
Helix 6
AA6
A
554 560Right-handed alpha
Helix 7
AA7
A
561 563Right-handed 310
Helix 8
AA8
A
578 590Right-handed alpha
Helix 9
AA9
A
603 611Right-handed alpha
Helix 10
AB1
A
638 661Right-handed alpha
Helix 11
AB2
A
776 793Right-handed alpha
Helix 12
AB3
A
854 860Right-handed alpha
Helix 13
AB4
A
861 866Right-handed 310
Helix 14
AB5
C
57 65Right-handed alpha
Helix 15
AB6
C
73 83Right-handed alpha
Helix 16
AB7
C
89 93Right-handed 310
Helix 17
AB8
C
94 113Right-handed alpha
Helix 18
AB9
C
161 172Right-handed alpha
Helix 19
AC1
C
176 188Right-handed alpha
Helix 20
AC2
C
189 194Right-handed alpha
Helix 21
AC3
C
267 283Right-handed alpha
Helix 22
AC4
C
297 301Right-handed 310
Helix 23
AC5
C
334 344Right-handed alpha
Helix 24
AC6
C
351 356Right-handed 310
Helix 25
AC7
C
358 360Right-handed 310
Helix 26
AC8
C
361 372Right-handed alpha
Helix 27
AC9
C
374 384Right-handed alpha
Helix 28
AD1
C
412 425Right-handed alpha
Helix 29
AD2
C
435 448Right-handed alpha
Helix 30
AD3
C
451 469Right-handed alpha
Helix 31
AD4
C
469 494Right-handed alpha
Helix 32
AD5
C
516 542Right-handed alpha
Helix 33
AD6
C
588 608Right-handed alpha
Helix 34
AD7
C
618 638Right-handed alpha
Helix 35
AD8
C
642 647Right-handed alpha
Helix 36
AD9
C
662 672Right-handed 310
Helix 37
AE1
C
693 697Right-handed 310
Helix 38
AE2
C
707 731Right-handed alpha
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There are 10 sheets in PDB entry 9NEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 425first strand
Strand 2
A
881 888anti-parallel
Strand 3
A
772 774parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 456first strand
Strand 2
A
546 550anti-parallel
Strand 3
A
535 538anti-parallel
Strand 4
A
613 615anti-parallel
Strand 5
A
821 823anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 630first strand
Strand 2
A
761 767anti-parallel
Strand 3
A
674 677anti-parallel
Strand 4
A
841 843anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 56first strand
Strand 2
C
30 40anti-parallel
Strand 3
C
7 22anti-parallel
Strand 4
C
121 126anti-parallel
Strand 5
C
133 138anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
221 223first strand
Strand 2
C
207 212anti-parallel
Strand 3
C
196 202anti-parallel
Strand 4
C
149 157anti-parallel
Strand 5
C
258 261parallel
Strand 6
C
320 322parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
232 237first strand
Strand 2
C
246 251anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
293 296first strand
Strand 2
C
311 314anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
398 400first strand
Strand 2
C
560 563anti-parallel
Strand 3
C
569 572anti-parallel
Strand 4
C
579 582anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
496 501first strand
Strand 2
C
505 510anti-parallel
Strand 3
C
405 409anti-parallel
Strand 4
C
553 558anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
648 650first strand
Strand 2
C
677 682anti-parallel
Strand 3
C
690 692anti-parallel
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