Analysis of interatomic Contacts of Structural Units in PDB entry:
9NEG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NEG entry

There are 6 chains in PDB entry 9NEG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 83THR 489
B
 PRO 83THR 489
C
 PRO 83THR 489
D
 PRO 83GLU 488
J
 ALA 2GLY 11
I
 ALA 2LYS 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 9NEG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
112 117Right-handed alpha
Helix 2
AA2
A
125 129Right-handed 310
Helix 3
AA3
A
148 159Right-handed alpha
Helix 4
AA4
A
169 181Right-handed alpha
Helix 5
AA5
A
183 194Right-handed alpha
Helix 6
AA6
A
225 248Right-handed alpha
Helix 7
AA7
A
279 298Right-handed alpha
Helix 8
AA8
A
311 319Right-handed alpha
Helix 9
AA9
A
320 326Right-handed alpha
Helix 10
AB1
A
358 368Right-handed alpha
Helix 11
AB2
A
369 377Right-handed 310
Helix 12
AB3
A
379 392Right-handed alpha
Helix 13
AB4
A
392 419Right-handed alpha
Helix 14
AB5
A
429 431Right-handed 310
Helix 15
AB6
A
432 441Right-handed alpha
Helix 16
AB7
A
452 472Right-handed alpha
Helix 17
AB8
A
473 489Right-handed alpha
Helix 18
AB9
B
112 117Right-handed alpha
Helix 19
AC1
B
145 147Right-handed 310
Helix 20
AC2
B
148 159Right-handed alpha
Helix 21
AC3
B
169 181Right-handed alpha
Helix 22
AC4
B
183 194Right-handed alpha
Helix 23
AC5
B
226 248Right-handed alpha
Helix 24
AC6
B
279 298Right-handed alpha
Helix 25
AC7
B
311 319Right-handed alpha
Helix 26
AC8
B
320 326Right-handed alpha
Helix 27
AC9
B
358 368Right-handed alpha
Helix 28
AD1
B
369 377Right-handed 310
Helix 29
AD2
B
379 392Right-handed alpha
Helix 30
AD3
B
392 419Right-handed alpha
Helix 31
AD4
B
429 431Right-handed 310
Helix 32
AD5
B
432 441Right-handed alpha
Helix 33
AD6
B
452 472Right-handed alpha
Helix 34
AD7
B
473 489Right-handed alpha
Helix 35
AD8
C
112 117Right-handed alpha
Helix 36
AD9
C
120 125Right-handed alpha
Helix 37
AE1
C
126 129Right-handed 310
Helix 38
AE2
C
148 159Right-handed alpha
Helix 39
AE3
C
169 181Right-handed alpha
Helix 40
AE4
C
183 194Right-handed alpha
Helix 41
AE5
C
226 248Right-handed alpha
Helix 42
AE6
C
279 298Right-handed alpha
Helix 43
AE7
C
311 319Right-handed alpha
Helix 44
AE8
C
320 326Right-handed alpha
Helix 45
AE9
C
358 368Right-handed alpha
Helix 46
AF1
C
369 378Right-handed 310
Helix 47
AF2
C
379 392Right-handed alpha
Helix 48
AF3
C
392 419Right-handed alpha
Helix 49
AF4
C
429 431Right-handed 310
Helix 50
AF5
C
432 441Right-handed alpha
Helix 51
AF6
C
452 472Right-handed alpha
Helix 52
AF7
C
473 489Right-handed alpha
Helix 53
AF8
D
112 117Right-handed alpha
Helix 54
AF9
D
120 125Right-handed alpha
Helix 55
AG1
D
126 129Right-handed 310
Helix 56
AG2
D
148 159Right-handed alpha
Helix 57
AG3
D
169 181Right-handed alpha
Helix 58
AG4
D
183 188Right-handed alpha
Helix 59
AG5
D
189 194Right-handed 310
Helix 60
AG6
D
226 248Right-handed alpha
Helix 61
AG7
D
279 298Right-handed alpha
Helix 62
AG8
D
311 319Right-handed alpha
Helix 63
AG9
D
320 326Right-handed alpha
Helix 64
AH1
D
358 368Right-handed alpha
Helix 65
AH2
D
369 377Right-handed 310
Helix 66
AH3
D
379 392Right-handed alpha
Helix 67
AH4
D
392 419Right-handed alpha
Helix 68
AH5
D
429 431Right-handed 310
Helix 69
AH6
D
432 441Right-handed alpha
Helix 70
AH7
D
452 472Right-handed alpha
Helix 71
AH8
D
473 488Right-handed alpha
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There are 4 sheets in PDB entry 9NEG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 111first strand
Strand 2
A
98 103anti-parallel
Strand 3
A
139 142parallel
Strand 4
A
133 134anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 111first strand
Strand 2
B
98 103anti-parallel
Strand 3
B
139 141parallel
Strand 4
B
133 134anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 111first strand
Strand 2
C
98 103anti-parallel
Strand 3
C
139 141parallel
Strand 4
C
133 134anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
106 111first strand
Strand 2
D
98 103anti-parallel
Strand 3
D
139 141parallel
Strand 4
D
133 134anti-parallel
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